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TITLE: merlin, an improved framework for the reconstruction of high-quality genome-scale metabolic models  Full Text
AUTHORS: Capela, Joao; Lagoa, Davide; Rodrigues, Ruben; Cunha, Emanuel; Cruz, Fernando; Barbosa, Ana; Bastos, Jose; Lima, Diogo; Ferreira, Eugenio C.; Rocha, Miguel ; Dias, Oscar;
PUBLISHED: 2022, SOURCE: NUCLEIC ACIDS RESEARCH, VOLUME: 50, ISSUE: 11
INDEXED IN: Scopus WOS CrossRef: 18
IN MY: ORCID
13
TITLE: Predicting the number of biochemical transformations needed to synthesize a compound
AUTHORS: Correia, Joao; Carreira, Rafael; Pereira, Vitor ; Rocha, Miguel ;
PUBLISHED: 2022, SOURCE: IEEE International Conference on Fuzzy Systems (FUZZ-IEEE) / IEEE World Congress on Computational Intelligence (IEEE WCCI) / International Joint Conference on Neural Networks (IJCNN) / IEEE Congress on Evolutionary Computation (IEEE CEC) in 2022 INTERNATIONAL JOINT CONFERENCE ON NEURAL NETWORKS (IJCNN), VOLUME: 2022-July
INDEXED IN: Scopus WOS CrossRef
14
TITLE: ProPythia: A Python package for protein classification based on machine and deep learning  Full Text
AUTHORS: Sequeira, Ana Marta; Lousa, Diana; Rocha, Miguel ;
PUBLISHED: 2022, SOURCE: NEUROCOMPUTING, VOLUME: 484
INDEXED IN: Scopus WOS CrossRef: 13
IN MY: ORCID
15
TITLE: Recurrent Deep Neural Networks for Enzyme Functional Annotation
AUTHORS: Sequeira, Ana Marta; Rocha, Miguel ;
PUBLISHED: 2022, SOURCE: 15th International Conference on Practical Applications of Computational Biology and Bioinformatics (PACBB) in PRACTICAL APPLICATIONS OF COMPUTATIONAL BIOLOGY & BIOINFORMATICS, PACBB 2021, VOLUME: 325
INDEXED IN: Scopus WOS CrossRef: 3
IN MY: ORCID
16
TITLE: UPIMAPI, reCOGnizer and KEGGCharter: Bioinformatics tools for functional annotation and visualization of (meta)-omics datasets
AUTHORS: Sequeira, Joao C.; Rocha, Miguel ; Alves, M. Madalena; Salvador, Andreia F.;
PUBLISHED: 2022, SOURCE: COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, VOLUME: 20
INDEXED IN: Scopus WOS
17
TITLE: Variational Autoencoders and Evolutionary Algorithms for Targeted Novel Enzyme Design
AUTHORS: Martins, Miguel; Rocha, Miguel ; Pereira, Vitor ;
PUBLISHED: 2022, SOURCE: IEEE Congress on Evolutionary Computation (CEC) in 2022 IEEE CONGRESS ON EVOLUTIONARY COMPUTATION (CEC)
INDEXED IN: Scopus WOS CrossRef
18
TITLE: Deep learning for drug response prediction in cancer
AUTHORS: Baptista, D; Ferreira, PG ; Rocha, M ;
PUBLISHED: 2021, SOURCE: BRIEFINGS IN BIOINFORMATICS, VOLUME: 22, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef: 121
IN MY: ORCID
19
TITLE: Generative Deep Learning for Targeted Compound Design  Full Text
AUTHORS: Sousa, T; Correia, J; Pereira, V ; Rocha, M ;
PUBLISHED: 2021, SOURCE: JOURNAL OF CHEMICAL INFORMATION AND MODELING, VOLUME: 61, ISSUE: 11
INDEXED IN: Scopus WOS CrossRef: 63
IN MY: ORCID
20
TITLE: Optimizing NFV deployment in Segment Routing
AUTHORS: Camaz, Goncalo; Pereira, Vitor ; Rocha, Miguel ; Sousa, Pedro;
PUBLISHED: 2021, SOURCE: 16th Iberian Conference on Information Systems and Technologies (CISTI) in PROCEEDINGS OF 2021 16TH IBERIAN CONFERENCE ON INFORMATION SYSTEMS AND TECHNOLOGIES (CISTI'2021)
INDEXED IN: Scopus WOS CrossRef
IN MY: ORCID
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