Nuno Alberto Paulino da Fonseca


AuthID: R-000-DK8

Confirmed Publications: 119



11
TITLE: Evaluating the impact of sampling strategies and bioinformatics on ethanol-based DNA metabarcoding
AUTHORS: Filipa MS Martins; Nuno A Fonseca ; Bastian Egeter; Joana Pinto; Tiago Assunção; Cátia Chaves; Pedro Sousa; Joaquim Jesus; Pedro Beja;
PUBLISHED: 2021, SOURCE: ARPHA Conference Abstracts, VOLUME: 4
INDEXED IN: CrossRef
IN MY: ORCID
12
TITLE: Metabarcoding with MinION: Speeding up the detection of invasive aquatic species using environmental DNA and nanopore sequencing
AUTHORS: Bastian Egeter; Joana Veríssimo; Manuel Lopes-Lima; catia chaves; Joana Pinto; Nicoletta Riccardi; Pedro Beja; Nuno A Fonseca ;
PUBLISHED: 2021, SOURCE: ARPHA Conference Abstracts, VOLUME: 4
INDEXED IN: CrossRef
IN MY: ORCID
13
TITLE: Selection underlies phenotypic divergence in the insular Azores woodpigeon  Full Text
AUTHORS: Andrade, P; Cataldo, D; Fontaine, R; Rodrigues, TM; Queiros, J; Neves, V; Fonseca, A ; Carneiro, M; Goncalves, D ;
PUBLISHED: 2021, SOURCE: ZOOLOGICA SCRIPTA, VOLUME: 50, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef: 2
IN MY: ORCID
14
TITLE: Shedding Light on the African Enigma: In Vitro Testing of Homo sapiens-Helicobacter pylori Coevolution
AUTHORS: Cavadas, B; Leite, M; Pedro, N; Magalhaes, AC; Melo, J; Correia, M; Maximo, V ; Camacho, R ; Fonseca, NA ; Figueiredo, C ; Pereira, L;
PUBLISHED: 2021, SOURCE: MICROORGANISMS, VOLUME: 9, ISSUE: 2
INDEXED IN: Scopus WOS CrossRef: 9
IN MY: ORCID
15
TITLE: Tumour gene expression signature in primary melanoma predicts long-term outcomes
AUTHORS: Garg, M; Couturier, DL; Nsengimana, J; Fonseca, NA ; Wongchenko, M; Yan, YB; Lauss, M; Jonsson, GB; Newton Bishop, J; Parkinson, C; Middleton, MR; Bishop, DT; McDonald, S; Stefanos, N; Tadross, J; Vergara, IA; Lo, S; Newell, F; Wilmott, JS; Thompson, JF; Long, GV; Scolyer, RA; Corrie, P; Adams, DJ; Brazma, A; Rabbie, R; ...More
PUBLISHED: 2021, SOURCE: NATURE COMMUNICATIONS, VOLUME: 12, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef: 30
IN MY: ORCID
16
TITLE: A user guide for the online exploration and visualization of PCAWG data
AUTHORS: Mary J Goldman; Junjun Zhang; Nuno A Fonseca ; Isidro Cortés-Ciriano; Qian Xiang; Brian Craft; Elena Piñeiro-Yáñez; Brian D O’Connor; Wojciech Bazant; Elisabet Barrera; Alfonso Muñoz-Pomer; Robert Petryszak; Anja Füllgrabe; Fatima Al-Shahrour; Maria Keays; David Haussler; John N Weinstein; Wolfgang Huber; Alfonso Valencia; Peter J Park; Irene Papatheodorou; Jingchun Zhu; Vincent Ferretti; Miguel Vazquez; ...More
PUBLISHED: 2020, SOURCE: Nature Communications, VOLUME: 11, ISSUE: 1
INDEXED IN: CrossRef: 20
IN MY: ORCID
17
TITLE: An RNA-seq Based Machine Learning Approach Identifies Latent Tuberculosis Patients With an Active Tuberculosis Profile  Full Text
AUTHORS: Estévez, O; Anibarro, L; Garet, E; Pallares, Á; Barcia, L; Calviño, L; Maueia, C; Mussá, T; Fdez Riverola, F; Glez Peña, D; Reboiro Jato, M; López Fernández, H; Fonseca, NA ; Reljic, R; González Fernández, Á;
PUBLISHED: 2020, SOURCE: Frontiers in Immunology, VOLUME: 11
INDEXED IN: Scopus CrossRef: 25
IN MY: ORCID
18
TITLE: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes  Full Text
AUTHORS: Esther Rheinbay; PCAWG Drivers and Functional Interpretation Working Group, ; Morten Muhlig Nielsen; Federico Abascal; Jeremiah A Wala; Ofer Shapira; Grace Tiao; Henrik Hornshøj; Julian M Hess; Randi Istrup Juul; Ziao Lin; Lars Feuerbach; Radhakrishnan Sabarinathan; Tobias Madsen; Jaegil Kim; Loris Mularoni; Shimin Shuai; Andrés Lanzós; Carl Herrmann; Yosef E Maruvka; Ciyue Shen; Samirkumar B Amin; Pratiti Bandopadhayay; Johanna Bertl; Keith A Boroevich; John Busanovich; Joana Carlevaro-Fita; Dimple Chakravarty; Calvin Wing Yiu Chan; David Craft; Priyanka Dhingra; Klev Diamanti; Nuno A Fonseca ; Abel Gonzalez-Perez; Qianyun Guo; Mark P Hamilton; Nicholas J Haradhvala; Chen Hong; Keren Isaev; Todd A Johnson; Malene Juul; Andre Kahles; Abdullah Kahraman; Youngwook Kim; Jan Komorowski; Kiran Kumar; Sushant Kumar; Donghoon Lee; Kjong-Van Lehmann; Yilong Li; Eric Minwei Liu; Lucas Lochovsky; Keunchil Park; Oriol Pich; Nicola D Roberts; Gordon Saksena; Steven E Schumacher; Nikos Sidiropoulos; Lina Sieverling; Nasa Sinnott-Armstrong; Chip Stewart; David Tamborero; Jose M C Tubio; Husen M Umer; Liis Uusküla-Reimand; Claes Wadelius; Lina Wadi; Xiaotong Yao; Cheng-Zhong Zhang; Jing Zhang; James E Haber; Asger Hobolth; Marcin Imielinski; Manolis Kellis; Michael S Lawrence; Christian von Mering; Hidewaki Nakagawa; Benjamin J Raphael; Mark A Rubin; Chris Sander; Lincoln D Stein; Joshua M Stuart; Tatsuhiko Tsunoda; David A Wheeler; Rory Johnson; Jüri Reimand; Mark Gerstein; Ekta Khurana; Peter J Campbell; Núria López-Bigas; Joachim Weischenfeldt; Rameen Beroukhim; Iñigo Martincorena; Jakob Skou Pedersen; Gad Getz; PCAWG Structural Variation Working Group, ; PCAWG Consortium, ; ...More
PUBLISHED: 2020, SOURCE: Nat., VOLUME: 578, ISSUE: 7793
INDEXED IN: Scopus DBLP CrossRef: 396
IN MY: ORCID | DBLP
19
TITLE: Butler enables rapid cloud-based analysis of thousands of human genomes  Full Text
AUTHORS: Yakneen, S; Waszak, SM; Gertz, M; Korbel, JO; Aminou, B; Bartolome, J; Boroevich, KA; Boyce, R; Brooks, AN; Buchanan, A; Buchhalter, I; Butler, AP; Byrne, NJ; Cafferkey, A; Campbell, PJ; Chen, ZH; Cho, S; Choi, W; Clapham, P; Davis Dusenbery, BN; De La Vega, FM; Demeulemeester, J; Dow, MT; Dursi, LJ; Eils, J; Eils, R; Ellrott, K; Farcas, C; Favero, F; Fayzullaev, N; Ferretti, V; Flicek, P; Fonseca, NA ; Gelpi, JL; Getz, G; Gibson, B; Grossman, RL; Harismendy, O; Heath, AP; Heinold, MC; Hess, JM; Hofmann, O; Hong, JH; Hudson, TJ; Hutter, B; Hutter, CM; Hubschmann, D; Imoto, S; Ivkovic, S; Jeon, SH; Jiao, W; Jung, J; Kabbe, R; Kahles, A; Kerssemakers, JNA; Kim, HL; Kim, H; Kim, J; Kim, Y; Kleinheinz, K; Koscher, M; Koures, A; Kovacevic, M; Lawerenz, C; Leshchiner, I; Liu, J; Livitz, D; Mihaiescu, GL; Mijalkovic, S; Lazic, AM; Miyano, S; Miyoshi, N; Nahal Bose, HK; Nakagawa, H; Nastic, M; Newhouse, SJ; Nicholson, J; O'Connor, BD; Ocana, D; Ohi, K; Ohno Machado, L; Omberg, L; Ouellette, BFF; Paramasivam, N; Perry, MD; Pihl, TD; Prinz, M; Puiggros, M; Radovic, P; Raine, KM; Rheinbay, E; Rosenberg, M; Royo, R; Ratsch, G; Saksena, G; Schlesner, M; Shorser, SI; Short, C; Sofia, HJ; Spring, J; Stein, LD; Struck, AJ; Tiao, G; Tijanic, N; Torrents, D; Van Loo, P; Vazquez, M; Vicente, D; Wala, JA; Wang, ZN; Weischenfeldt, J; Werner, J; Williams, A; Woo, Y; Wright, AJ; Xiang, Q; Yang, LM; Yuen, D; Yung, CK; Zhang, JJ; ...More
PUBLISHED: 2020, SOURCE: NATURE BIOTECHNOLOGY, VOLUME: 38, ISSUE: 3
INDEXED IN: Scopus WOS CrossRef: 8
IN MY: ORCID
20
TITLE: Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis
AUTHORS: Carlevaro Fita, J; Lanzós, A; Feuerbach, L; Hong, C; Mas Ponte, D; Pedersen, JS; Abascal, F; Amin, SB; Bader, GD; Barenboim, J; Beroukhim, R; Bertl, J; Boroevich, KA; Brunak, S; Campbell, PJ; Carlevaro Fita, J; Chakravarty, D; Chan, CWY; Chen, K; Choi, JK; Deu Pons, J; Dhingra, P; Diamanti, K; Feuerbach, L; Fink, JL; Fonseca, NA ; Frigola, J; Gambacorti Passerini, C; Garsed, DW; Gerstein, M; Getz, G; Gonzalez Perez, A; Guo, Q; Gut, IG; Haan, D; Hamilton, MP; Haradhvala, NJ; Harmanci, AO; Helmy, M; Herrmann, C; Hess, JM; Hobolth, A; Hodzic, E; Hong, C; Hornshøj, H; Isaev, K; Izarzugaza, JMG; Johnson, R; Johnson, TA; Juul, M; Juul, RI; Kahles, A; Kahraman, A; Kellis, M; Khurana, E; Kim, J; Kim, JK; Kim, Y; Komorowski, J; Korbel, JO; Kumar, S; Lanzós, A; Larsson, E; Lawrence, MS; Lee, D; Lehmann, KV; Li, S; Li, X; Lin, Z; Liu, EM; Lochovsky, L; Lou, S; Madsen, T; Marchal, K; Martincorena, I; Martinez Fundichely, A; Maruvka, YE; McGillivray, PD; Meyerson, W; Muiños, F; Mularoni, L; Nakagawa, H; Nielsen, MM; Paczkowska, M; Park, K; Park, K; Pedersen, JS; Pich, O; Pons, T; Pulido Tamayo, S; Raphael, BJ; Reimand, J; Reyes Salazar, I; Reyna, MA; Rheinbay, E; Rubin, MA; Rubio Perez, C; Sabarinathan, R; Sahinalp, SC; Saksena, G; Salichos, L; Sander, C; Schumacher, SE; Shackleton, M; Shapira, O; Shen, C; Shrestha, R; Shuai, S; Sidiropoulos, N; Sieverling, L; Sinnott Armstrong, N; Stein, LD; Stuart, JM; Tamborero, D; Tiao, G; Tsunoda, T; Umer, HM; Uusküla Reimand, L; Valencia, A; Vazquez, M; Verbeke, LPC; Wadelius, C; Wadi, L; Wang, J; Warrell, J; Waszak, SM; Weischenfeldt, J; Wheeler, DA; Wu, G; Yu, J; Zhang, J; Zhang, X; Zhang, Y; Zhao, Z; Zou, L; von Mering, C; Johnson, R; ...More
PUBLISHED: 2020, SOURCE: COMMUNICATIONS BIOLOGY, VOLUME: 3, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef: 129
IN MY: ORCID
Page 2 of 12. Total results: 119.

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