Pedro Gabriel Dias Ferreira


AuthID: R-000-ERJ

Confirmed Publications: 76



31
TITLE: Learning influential genes on cancer gene expression data with stacked denoising autoencoders
AUTHORS: Vitor Teixeira; Rui Camacho ; Pedro G Ferreira ;
PUBLISHED: 2017, SOURCE: IEEE International Conference on Bioinformatics and Biomedicine (IEEE BIBM) in 2017 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE (BIBM), VOLUME: 2017-January
INDEXED IN: Scopus WOS DBLP CrossRef: 12
32
TITLE: The impact of rare variation on gene expression across tissues  Full Text
AUTHORS: Xin Li; Yungil Kim; Emily K Tsang; Joe R Davis; Farhan N Damani; Colby Chiang; Gaelen T Hess; Zachary Zappala; Benjamin J Strober; Alexandra J Scott; Amy Li; Andrea Ganna; Michael C Bassik; Jason D Merker; François Aguet; Kristin G Ardlie; Beryl B Cummings; Ellen T Gelfand; Gad Getz; Kane Hadley; Robert E Handsaker; Katherine H Huang; Seva Kashin; Konrad J Karczewski; Monkol Lek; Xiao Li; Daniel G MacArthur; Jared L Nedzel; Duyen T Nguyen; Michael S Noble; Ayellet V Segrè; Casandra A Trowbridge; Taru Tukiainen; Nathan S Abell; Brunilda Balliu; Ruth Barshir; Omer Basha; Alexis Battle; Gireesh K Bogu; Andrew Brown; Christopher D Brown; Stephane E Castel; Lin S Chen; Colby Chiang; Donald F Conrad; Nancy J Cox; Farhan N Damani; Joe R Davis; Olivier Delaneau; Emmanouil T Dermitzakis; Barbara E Engelhardt; Eleazar Eskin; Pedro G Ferreira ; Laure Frésard; Eric R Gamazon; Diego Garrido-Martín; Ariel D.H Gewirtz; Genna Gliner; Michael J Gloudemans; Roderic Guigo; Ira M Hall; Buhm Han; Yuan He; Farhad Hormozdiari; Cedric Howald; Hae Kyung Im; Brian Jo; Eun Yong Kang; Yungil Kim; Sarah Kim-Hellmuth; Tuuli Lappalainen; Gen Li; Xin Li; Boxiang Liu; Serghei Mangul; Mark I McCarthy; Ian C McDowell; Pejman Mohammadi; Jean Monlong; Stephen B Montgomery; Manuel Muñoz-Aguirre; Anne W Ndungu; Dan L Nicolae; Andrew B Nobel; Meritxell Oliva; Halit Ongen; John J Palowitch; Nikolaos Panousis; Panagiotis Papasaikas; YoSon Park; Princy Parsana; Anthony J Payne; Christine B Peterson; Jie Quan; Ferran Reverter; Chiara Sabatti; Ashis Saha; Michael Sammeth; Alexandra J Scott; Andrey A Shabalin; Reza Sodaei; Matthew Stephens; Barbara E Stranger; Benjamin J Strober; Jae Hoon Sul; Emily K Tsang; Sarah Urbut; Martijn van de Bunt; Gao Wang; Xiaoquan Wen; Fred A Wright; Hualin S Xi; Esti Yeger-Lotem; Zachary Zappala; Judith B Zaugg; Yi-Hui Zhou; Joshua M Akey; Daniel Bates; Joanne Chan; Lin S Chen; Melina Claussnitzer; Kathryn Demanelis; Morgan Diegel; Jennifer A Doherty; Andrew P Feinberg; Marian S Fernando; Jessica Halow; Kasper D Hansen; Eric Haugen; Peter F Hickey; Lei Hou; Farzana Jasmine; Ruiqi Jian; Lihua Jiang; Audra Johnson; Rajinder Kaul; Manolis Kellis; Muhammad G Kibriya; Kristen Lee; Jin Billy Li; Qin Li; Xiao Li; Jessica Lin; Shin Lin; Sandra Linder; Caroline Linke; Yaping Liu; Matthew T Maurano; Benoit Molinie; Stephen B Montgomery; Jemma Nelson; Fidencio J Neri; Meritxell Oliva; Yongjin Park; Brandon L Pierce; Nicola J Rinaldi; Lindsay F Rizzardi; Richard Sandstrom; Andrew Skol; Kevin S Smith; Michael P Snyder; John Stamatoyannopoulos; Barbara E Stranger; Hua Tang; Emily K Tsang; Li Wang; Meng Wang; Nicholas Van Wittenberghe; Fan Wu; Rui Zhang; Concepcion R Nierras; Philip A Branton; Latarsha J Carithers; Ping Guan; Helen M Moore; Abhi Rao; Jimmie B Vaught; Sarah E Gould; Nicole C Lockart; Casey Martin; Jeffery P Struewing; Simona Volpi; Anjene M Addington; Susan E Koester; Roger R Little; Lori E Brigham; Richard Hasz; Marcus Hunter; Christopher Johns; Mark Johnson; Gene Kopen; William F Leinweber; John T Lonsdale; Alisa McDonald; Bernadette Mestichelli; Kevin Myer; Brian Roe; Michael Salvatore; Saboor Shad; Jeffrey A Thomas; Gary Walters; Michael Washington; Joseph Wheeler; Jason Bridge; Barbara A Foster; Bryan M Gillard; Ellen Karasik; Rachna Kumar; Mark Miklos; Michael T Moser; Scott D Jewell; Robert G Montroy; Daniel C Rohrer; Dana R Valley; David A Davis; Deborah C Mash; Anita H Undale; Anna M Smith; David E Tabor; Nancy V Roche; Jeffrey A McLean; Negin Vatanian; Karna L Robinson; Leslie Sobin; Mary E Barcus; Kimberly M Valentino; Liqun Qi; Steven Hunter; Pushpa Hariharan; Shilpi Singh; Ki Sung Um; Takunda Matose; Maria M Tomaszewski; Laura K Barker; Maghboeba Mosavel; Laura A Siminoff; Heather M Traino; Paul Flicek; Thomas Juettemann; Magali Ruffier; Dan Sheppard; Kieron Taylor; Stephen J Trevanion; Daniel R Zerbino; Brian Craft; Mary Goldman; Maximilian Haeussler; James J Kent; Christopher M Lee; Benedict Paten; Kate R Rosenbloom; John Vivian; Jingchun Zhu; Ira M Hall; Alexis Battle; Stephen B Montgomery; ...More
PUBLISHED: 2017, SOURCE: Nature, VOLUME: 550, ISSUE: 7675
INDEXED IN: Scopus CrossRef: 218
IN MY: ORCID | CIÊNCIAVITAE
33
TITLE: Time-dependent genetic effects on gene expression implicate aging processes
AUTHORS: Bryois, J; Buil, A; Ferreira, PG ; Panousis, NI; Brown, AA; Viñuela, A; Planchon, A; Bielser, D; Small, K; Spector, T; Dermitzakis, ET;
PUBLISHED: 2017, SOURCE: Genome Research, VOLUME: 27, ISSUE: 4
INDEXED IN: Scopus CrossRef: 32
IN MY: ORCID | CIÊNCIAVITAE
34
TITLE: Sequence variation between 462 human individuals fine-tunes functional sites of RNA processing  Full Text
AUTHORS: Pedro G Ferreira ; Martin Oti; Matthias Barann; Thomas Wieland; Suzana Ezquina; Marc R Friedländer; Manuel A Rivas; Anna Esteve-Codina; Xavier Estivill; Roderic Guigó; Emmanouil Dermitzakis; Stylianos Antonarakis; Thomas Meitinger; Tim M Strom; Aarno Palotie; Jean François Deleuze; Ralf Sudbrak; Hans Lerach; Ivo Gut; Ann-Christine Syvänen; Ulf Gyllensten; Stefan Schreiber; Philip Rosenstiel; Han Brunner; Joris Veltman; Peter A.C.T Hoen; Gert Jan van Ommen; Angel Carracedo; Alvis Brazma; Paul Flicek; Anne Cambon-Thomsen; Jonathan Mangion; David Bentley; Ada Hamosh; Philip Rosenstiel; Tim M Strom; Tuuli Lappalainen; Roderic Guigó; Michael Sammeth; ...More
PUBLISHED: 2016, SOURCE: SCIENTIFIC REPORTS, VOLUME: 6
INDEXED IN: Scopus WOS CrossRef: 22
IN MY: ORCID | CIÊNCIAVITAE
35
TITLE: Spatiotemporal Control of Forkhead Binding to DNA Regulates the Meiotic Gene Expression Program
AUTHORS: Isabel Alves Rodrigues; Pedro G Ferreira ; Alberto Moldon; Ana P Vivancos; Elena Hidalgo; Roderic Guigo; Jose Ayte;
PUBLISHED: 2016, SOURCE: CELL REPORTS, VOLUME: 14, ISSUE: 4
INDEXED IN: Scopus WOS CrossRef: 11
IN MY: ORCID | CIÊNCIAVITAE
36
TITLE: Biased allelic expression in human primary fibroblast single cells
AUTHORS: Borel, C; Ferreira, PG ; Santoni, F; Delaneau, O; Fort, A; Popadin, KY; Garieri, M; Falconnet, E; Ribaux, P; Guipponi, M; Padioleau, I; Carninci, P; Dermitzakis, ET; Antonarakis, SE;
PUBLISHED: 2015, SOURCE: American Journal of Human Genetics, VOLUME: 96, ISSUE: 1
INDEXED IN: Scopus CrossRef: 111
IN MY: ORCID | CIÊNCIAVITAE
37
TITLE: Corrigendum: Sporadic and reversible chromothripsis in chronic lymphocytic leukemia revealed by longitudinal genomic analysis  Full Text
AUTHORS: Bassaganyas, L; Beà, S; Escaramís, G; Tornador, C; Salaverria, I; Zapata, L; Drechsel, O; Ferreira, PG ; Rodriguez Santiago, B; Tubio, JMC; Navarro, A; Martín García, D; López, C; Martínez Trillos, A; López Guillermo, A; Gut, M; Ossowski, S; López Otín, C; Campo, E; Estivill, X;
PUBLISHED: 2015, SOURCE: Leukemia, VOLUME: 29, ISSUE: 3
INDEXED IN: Scopus CrossRef: 3
IN MY: ORCID | CIÊNCIAVITAE
38
TITLE: Effect of predicted protein-truncating genetic variants on the human transcriptome
AUTHORS: Rivas, MA; Pirinen, M; Conrad, DF; Lek, M; Tsang, EK; Karczewski, KJ; Maller, JB; Kukurba, KR; DeLuca, DS; Fromer, M; Ferreira, PG ; Smith, KS; Zhang, R; Zhao, F; Banks, E; Poplin, R; Ruderfer, DM; Purcell, SM; Tukiainen, T; Minikel, EV; Stenson, PD; Cooper, DN; Huang, KH; Sullivan, TJ; Nedzel, J; Bustamante, CD; Li, JB; Daly, MJ; Guigo, R; Donnelly, P; Ardlie, K; Sammeth, M; Dermitzakis, ET; McCarthy, MI; Montgomery, SB; Lappalainen, T; MacArthur, DG; Segre, AV; Young, TR; Gelfand, ET; Trowbridge, CA; Ward, LD; Kheradpour, P; Iriarte, B; Meng, Y; Palmer, CD; Esko, T; Winckler, W; Hirschhorn, J; Kellis, M; Getz, G; Shablin, AA; Li, G; Y.-H Zhou; Nobel, AB; Rusyn, I; Wright, FA; Battle, A; Mostafavi, S; Mele, M; Reverter, F; Goldmann, J; Koller, D; Gamazon, ER; Im, HK; Konkashbaev, A; Nicolae, DL; Cox, NJ; Flutre, T; Wen, X; Stephens, M; Pritchard, JK; Tu, Z; Zhang, B; Huang, T; Long, Q; Lin, L; Yang, J; Zhu, J; Liu, J; Brown, A; Mestichelli, B; Tidwell, D; Lo, E; Salvatore, M; Shad, S; Thomas, JA; Lonsdale, JT; Choi, RC; Karasik, E; Ramsey, K; Moser, MT; Foster, BA; Gillard, BM; Syron, J; Fleming, J; Magazine, H; Hasz, R; Walters, GD; Bridge, JP; Miklos, M; Sullivan, S; Barker, LK; Traino, H; Mosavel, M; Siminoff, LA; Valley, DR; Rohrer, DC; Jewel, S; Branton, P; Sobin, LH; Barcus, M; Qi, L; Hariharan, P; Wu, S; Tabor, D; Shive, C; Smith, AM; Buia, SA; Undale, AH; Robinson, KL; Roche, N; Valentino, KM; Britton, A; Burges, R; Bradbury, D; Hambright, KW; Seleski, J; Korzeniewski, GE; Erickson, K; Marcus, Y; Tejada, J; Taherian, M; Lu, C; Robles, BE; Basile, M; Mash, DC; Volpi, S; Struewing, JP; Temple, GF; Boyer, J; Colantuoni, D; Little, R; Koester, S; Carithers, LJ; Moore, HM; Guan, P; Compton, C; Sawyer, SJ; Demchok, JP; Vaught, JB; Rabiner, CA; Lockhart, NC; Friedlander, MR; 't Hoen, PAC; Monlong, J; Gonzalez-Porta, M; Kurbatova, N; Griebel, T; Barann, M; Wieland, T; Greger, L; van Iterson, M; Almlof, J; Ribeca, P; Pulyakhina, I; Esser, D; Giger, T; Tikhonov, A; Sultan, M; Bertier, G; Lizano, E; Buermans, HPJ; Padioleau, I; Schwarzmayr, T; Karlberg, O; Ongen, H; Kilpinen, H; Beltran, S; Gut, M; Kahlem, K; Amstislavskiy, V; Stegle, O; Flicek, P; Strom, TM; Lehrach, H; Schreiber, S; Sudbrak, R; Carracedo, A; Antonarakis, SE; Hasler, R; A.-C Syvanen; G.-J van Ommen; Brazma, A; Meitinger, T; Rosenstiel, P; Gut, IG; Estivill, X; The GTEx Consortium, ; The Geuvadis Consortium, ; ...More
PUBLISHED: 2015, SOURCE: Science, VOLUME: 348, ISSUE: 6235
INDEXED IN: Scopus CrossRef: 241
IN MY: ORCID | CIÊNCIAVITAE
39
40
TITLE: Molecular signatures of plastic phenotypes in two eusocial insect species with simple societies
AUTHORS: Solenn Patalano; Anna Vlasova; Chris Wyatt; Philip Ewels; Francisco Camara; Pedro G Ferreirab ; Claire L Asher; Tomasz P Jurkowski; Anne Segonds Pichon; Martin Bachman; Irene Gonzalez Navarrete; Andre E Minoche; Felix Krueger; Ernesto Lowy; Marina Marcet Houben; Jose Luis Rodriguez Ales; Fabio S Nascimento; Shankar Balasubramanian; Toni Gabaldon; James E Tarver; Simon Andrews; Heinz Himmelbauer; William O H Hughes; Roderic Guigo; Wolf Reik; Seirian Sumner; ...More
PUBLISHED: 2015, SOURCE: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, VOLUME: 112, ISSUE: 45
INDEXED IN: Scopus WOS CrossRef: 178
IN MY: ORCID | CIÊNCIAVITAE
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