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TITLE: Synchronized age-related gene expression changes across multiple tissues in human and the link to complex diseases Full Text
AUTHORS: Jialiang Yang; Tao Huang; Francesca Petralia; Quan Long; Bin Zhang; Carmen Argmann; Yong Zhao; Charles V Mobbs; Eric E Schadt; Jun Zhu; Zhidong Tu; Kristin G Ardlie; David S Deluca; Ayellet V Segrè; Timothy J Sullivan; Taylor R Young; Ellen T Gelfand; Casandra A Trowbridge; Julian B Maller; Taru Tukiainen; Monkol Lek; Lucas D Ward; Pouya Kheradpour; Benjamin Iriarte; Yan Meng; Cameron D Palmer; Wendy Winckler; Joel Hirschhorn; Manolis Kellis; Daniel G MacArthur; Gad Getz; Andrey A Shablin; Gen Li; Yi Hui Zhou; Andrew B Nobel; Ivan Rusyn; Fred A Wright; Tuuli Lappalainen; Pedro G Ferreira ; Halit Ongen; Manuel A Rivas; Alexis Battle; Sara Mostafavi; Jean Monlong; Michael Sammeth; Marta Mele; Ferran Reverter; Jakob Goldman; Daphne Koller; Roderic Guigo; Mark I McCarthy; Emmanouil T Dermitzakis; Eric R Gamazon; Anuar Konkashbaev; Dan L Nicolae; Nancy J Cox; Timothée Flutre; Xiaoquan Wen; Matthew Stephens; Jonathan K Pritchard; Luan Lin; Jun Liu; Amanda Brown; Bernadette Mestichelli; Denee Tidwell; Edmund Lo; Mike Salvatore; Saboor Shad; Jeffrey A Thomas; John T Lonsdale; Christopher Choi; Ellen Karasik; Kimberly Ramsey; Michael T Moser; Barbara A Foster; Bryan M Gillard; John Syron; Johnelle Fleming; Harold Magazine; Rick Hasz; Gary D Walters; Jason P Bridge; Mark Miklos; Susan Sullivan; Laura K Barker; Heather Traino; Magboeba Mosavel; Laura A Siminoff; Dana R Valley; Daniel C Rohrer; Scott Jewel; Philip Branton; Leslie H Sobin; Liqun Qi; Pushpa Hariharan; Shenpei Wu; David Tabor; Charles Shive; Anna M Smith; Stephen A Buia; ...More
PUBLISHED: 2015, SOURCE: Scientific Reports, VOLUME: 5

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TITLE: The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans
AUTHORS: Ardlie, KG; DeLuca, DS; Segrè, AV; Sullivan, TJ; Young, TR; Gelfand, ET; Trowbridge, CA; Maller, JB; Tukiainen, T; Lek, M; Ward, LD; Kheradpour, P; Iriarte, B; Meng, Y; Palmer, CD; Esko, T; Winckler, W; Hirschhorn, JN; Kellis, M; MacArthur, DG; Getz, G; Shabalin, AA; Li, G; Zhou, YH; Nobel, AB; Rusyn, I; Wright, FA; Lappalainen, T; Ferreira, PG ; Ongen, H; Rivas, MA; Battle, A; Mostafavi, S; Monlong, J; Sammeth, M; Melé, M; Reverter, F; Goldmann, JM; Koller, D; Guigó, R; McCarthy, MI; Dermitzakis, ET; Gamazon, ER; Im, HK; Konkashbaev, A; Nicolae, DL; Cox, NJ; Flutre, T; Wen, X; Stephens, M; Pritchard, JK; Tu, Z; Zhang, B; Huang, T; Long, Q; Lin, L; Yang, J; Zhu, J; Liu, J; Brown, A; Mestichelli, B; Tidwell, D; Lo, E; Salvatore, M; Shad, S; Thomas, JA; Lonsdale, JT; Moser, MT; Gillard, BM; Karasik, E; Ramsey, K; Choi, C; Foster, BA; Syron, J; Fleming, J; Magazine, H; Hasz, R; Walters, GD; Bridge, JP; Miklos, M; Sullivan, S; Barker, LK; Traino, HM; Mosavel, M; Siminoff, LA; Valley, DR; Rohrer, DC; Jewell, SD; Branton, PA; Sobin, LH; Barcus, M; Qi, L; McLean, J; Hariharan, P; Um, KS; Wu, S; Tabor, D; Shive, C; Smith, AM; Buia, SA; Undale, AH; Robinson, KL; Roche, N; Valentino, KM; Britton, A; Burges, R; Bradbury, D; Hambright, KW; Seleski, J; Korzeniewski, GE; Erickson, K; Marcus, Y; Tejada, J; Taherian, M; Lu, C; Basile, M; Mash, DC; Volpi, S; Struewing, JP; Temple, GF; Boyer, J; Colantuoni, D; Little, R; Koester, S; Carithers, LJ; Moore, HM; Guan, P; Compton, C; Sawyer, SJ; Demchok, JP; Vaught, JB; Rabiner, CA; Lockhart, ; ...More
PUBLISHED: 2015, SOURCE: Science, VOLUME: 348, ISSUE: 6235

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TITLE: The human transcriptome across tissues and individuals
AUTHORS: Melé, M; Ferreira, PG ; Reverter, F; DeLuca, DS; Monlong, J; Sammeth, M; Young, TR; Goldmann, JM; Pervouchine, DD; Sullivan, TJ; Johnson, R; Segrè, AV; Djebali, S; Niarchou, A; Wright, FA; Lappalainen, T; Calvo, M; Getz, G; Dermitzakis, ET; Ardlie, KG; Guigó, R; ...More
PUBLISHED: 2015, SOURCE: Science, VOLUME: 348, ISSUE: 6235

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TITLE: Identification of genetic variants associated with alternative splicing using sQTLseekeR
AUTHORS: Monlong, J; Calvo, M; Ferreira, PG ; Guigó, R;
PUBLISHED: 2014, SOURCE: Nature Communications, VOLUME: 5, ISSUE: 1

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TITLE: Putative cis-regulatory drivers in colorectal cancer Full Text
AUTHORS: Ongen, H; Andersen, CL; Bramsen, JB; Oster, B; Rasmussen, MH; Ferreira, PG ; Sandoval, J; Vidal, E; Whiffin, N; Planchon, A; Padioleau, I; Bielser, D; Romano, L; Tomlinson, I; Houlston, RS; Esteller, M; Orntoft, TF; Dermitzakis, ET;
PUBLISHED: 2014, SOURCE: Nature, VOLUME: 512, ISSUE: 1

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TITLE: Tandem RNA chimeras contribute to transcriptome diversity in human population and are associated with intronic genetic variants Full Text
AUTHORS: Liliana Greger; Jing Su; Johan Rung; Pedro G Ferreira ; Tuuli Lappalainen; Emmanouil T Dermitzakis; Alvis Brazma; Geuvadis consortium, ;
PUBLISHED: 2014, SOURCE: PLoS ONE, VOLUME: 9, ISSUE: 8

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TITLE: Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia
AUTHORS: Ferreira, PG ; Jares, P; Rico, D; Gómez López, G; Martínez Trillos, A; Villamor, N; Ecker, S; González Pérez, A; Knowles, DG; Monlong, J; Johnson, R; Quesada, V; Djebali, S; Papasaikas, P; López Guerra, M; Colomer, D; Royo, C; Cazorla, M; Pinyol, M; Clot, G; Aymerich, M; Rozman, M; Kulis, M; Tamborero, D; Gouin, A; Blanc, J; Gut, M; Gut, I; Puente, XS; Pisano, DG; Martin Subero, JI; López Bigas, N; López Guillermo, A; Valencia, A; López Otín, C; Campo, E; Guigó, R; ...More
PUBLISHED: 2014, SOURCE: Genome Research, VOLUME: 24, ISSUE: 2

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