Oscar Manuel Lima Dias
AuthID: R-000-DYT
11
TITLE: TranSyT, an innovative framework for identifying transport systems
AUTHORS: Cunha, Emanuel; Lagoa, Davide; Faria, Jose P.; Liu, Filipe; Henry, Christopher S.; Dias, Oscar;
PUBLISHED: 2023, SOURCE: BIOINFORMATICS, VOLUME: 39, ISSUE: 8
AUTHORS: Cunha, Emanuel; Lagoa, Davide; Faria, Jose P.; Liu, Filipe; Henry, Christopher S.; Dias, Oscar;
PUBLISHED: 2023, SOURCE: BIOINFORMATICS, VOLUME: 39, ISSUE: 8
12
TITLE: The first multi-tissue genome-scale metabolic model of a woody plant highlights suberin biosynthesis pathways in Quercus suber Full Text
AUTHORS: Cunha, Emanuel; Silva, Miguel; Chaves, Ines; Demirci, Huseyin; Lagoa, Davide Rafael; Lima, Diogo; Rocha, Miguel; Rocha, Isabel; Dias, Oscar;
PUBLISHED: 2023, SOURCE: PLOS COMPUTATIONAL BIOLOGY, VOLUME: 19, ISSUE: 9
AUTHORS: Cunha, Emanuel; Silva, Miguel; Chaves, Ines; Demirci, Huseyin; Lagoa, Davide Rafael; Lima, Diogo; Rocha, Miguel; Rocha, Isabel; Dias, Oscar;
PUBLISHED: 2023, SOURCE: PLOS COMPUTATIONAL BIOLOGY, VOLUME: 19, ISSUE: 9
13
TITLE: PhageDPO: Phage Depolymerase Finder
AUTHORS: Maria Vieira; José Duarte; Rita Domingues; Hugo Oliveira; Oscar Dias;
PUBLISHED: 2023
AUTHORS: Maria Vieira; José Duarte; Rita Domingues; Hugo Oliveira; Oscar Dias;
PUBLISHED: 2023
14
TITLE: Towards a Multivariate Analysis of Genome-Scale Metabolic Models Derived from the BiGG Models Database
AUTHORS: Oliveira, Alexandre; Cunha, Emanuel; Cruz, Fernando; Capela, Joao; Sequeira, Joao; Sampaio, Marta; Dias, Oscar;
PUBLISHED: 2022, SOURCE: 15th International Conference on Practical Applications of Computational Biology and Bioinformatics (PACBB) in PRACTICAL APPLICATIONS OF COMPUTATIONAL BIOLOGY & BIOINFORMATICS, PACBB 2021, VOLUME: 325
AUTHORS: Oliveira, Alexandre; Cunha, Emanuel; Cruz, Fernando; Capela, Joao; Sequeira, Joao; Sampaio, Marta; Dias, Oscar;
PUBLISHED: 2022, SOURCE: 15th International Conference on Practical Applications of Computational Biology and Bioinformatics (PACBB) in PRACTICAL APPLICATIONS OF COMPUTATIONAL BIOLOGY & BIOINFORMATICS, PACBB 2021, VOLUME: 325
15
TITLE: A Genome-Scale Metabolic Model for the Human Pathogen Candida Parapsilosis and Early Identification of Putative Novel Antifungal Drug Targets Full Text
AUTHORS: Viana, R; Couceiro, D; Carreiro, T; Dias, O; Rocha, I; Teixeira, MC;
PUBLISHED: 2022, SOURCE: GENES, VOLUME: 13, ISSUE: 2
AUTHORS: Viana, R; Couceiro, D; Carreiro, T; Dias, O; Rocha, I; Teixeira, MC;
PUBLISHED: 2022, SOURCE: GENES, VOLUME: 13, ISSUE: 2
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TITLE: Exploring synergies between plant metabolic modelling and machine learning
AUTHORS: Sampaio, Marta; Rocha, Miguel; Dias, Oscar;
PUBLISHED: 2022, SOURCE: COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, VOLUME: 20
AUTHORS: Sampaio, Marta; Rocha, Miguel; Dias, Oscar;
PUBLISHED: 2022, SOURCE: COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, VOLUME: 20
17
TITLE: Modelling aptamers with nucleic acid mimics (NAM): From sequence to three-dimensional docking Full Text
AUTHORS: Oliveira, Ricardo; Pinho, Eva; Sousa, Ana Luisa; Dias, Oscar; Azevedo, Nuno Filipe ; Almeida, Carina;
PUBLISHED: 2022, SOURCE: PLOS ONE, VOLUME: 17, ISSUE: 3
AUTHORS: Oliveira, Ricardo; Pinho, Eva; Sousa, Ana Luisa; Dias, Oscar; Azevedo, Nuno Filipe ; Almeida, Carina;
PUBLISHED: 2022, SOURCE: PLOS ONE, VOLUME: 17, ISSUE: 3
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TITLE: merlin, an improved framework for the reconstruction of high-quality genome-scale metabolic models Full Text
AUTHORS: Capela, Joao; Lagoa, Davide; Rodrigues, Ruben; Cunha, Emanuel; Cruz, Fernando; Barbosa, Ana; Bastos, Jose; Lima, Diogo; Ferreira, Eugenio C.; Rocha, Miguel ; Dias, Oscar;
PUBLISHED: 2022, SOURCE: NUCLEIC ACIDS RESEARCH, VOLUME: 50, ISSUE: 11
AUTHORS: Capela, Joao; Lagoa, Davide; Rodrigues, Ruben; Cunha, Emanuel; Cruz, Fernando; Barbosa, Ana; Bastos, Jose; Lima, Diogo; Ferreira, Eugenio C.; Rocha, Miguel ; Dias, Oscar;
PUBLISHED: 2022, SOURCE: NUCLEIC ACIDS RESEARCH, VOLUME: 50, ISSUE: 11
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TITLE: Systematic assessment of template-based genome-scale metabolic models created with the BiGG Integration Tool
AUTHORS: Oliveira, Alexandre; Cunha, Emanuel; Cruz, Fernando; Capela, Joao; Sequeira, Joao C.; Sampaio, Marta; Sampaio, Claudia; Dias, Oscar;
PUBLISHED: 2022, SOURCE: JOURNAL OF INTEGRATIVE BIOINFORMATICS, VOLUME: 19, ISSUE: 3
AUTHORS: Oliveira, Alexandre; Cunha, Emanuel; Cruz, Fernando; Capela, Joao; Sequeira, Joao C.; Sampaio, Marta; Sampaio, Claudia; Dias, Oscar;
PUBLISHED: 2022, SOURCE: JOURNAL OF INTEGRATIVE BIOINFORMATICS, VOLUME: 19, ISSUE: 3
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TITLE: Reconciliation of Regulatory Data: The Regulatory Networks of Escherichia coli and Bacillus subtilis
AUTHORS: Lima, D; Cruz, F; Rocha, M; Dias, O;
PUBLISHED: 2021, SOURCE: 14th International Conference on Practical Applications of Computational Biology and Bioinformatics, PACBB 2020 in Advances in Intelligent Systems and Computing, VOLUME: 1240 AISC
AUTHORS: Lima, D; Cruz, F; Rocha, M; Dias, O;
PUBLISHED: 2021, SOURCE: 14th International Conference on Practical Applications of Computational Biology and Bioinformatics, PACBB 2020 in Advances in Intelligent Systems and Computing, VOLUME: 1240 AISC
