Ana Sofia Fernandes de Oliveira
AuthID: R-000-1GG
1
TITLE: Signal Propagation in the ATPase Domain of Mycobacterium tuberculosis DNA Gyrase from Dynamical-Nonequilibrium Molecular Dynamics Simulations Full Text
AUTHORS: Bundit Kamsri; Pharit Kamsri; Auradee Punkvang; Aunlika Chimprasit; Patchreenart Saparpakorn; Supa Hannongbua; James Spencer; Sofia S F Oliveira; Adrian J Mulholland; Pornpan Pungpo;
PUBLISHED: 2024, SOURCE: Biochemistry, VOLUME: 63, ISSUE: 11
AUTHORS: Bundit Kamsri; Pharit Kamsri; Auradee Punkvang; Aunlika Chimprasit; Patchreenart Saparpakorn; Supa Hannongbua; James Spencer; Sofia S F Oliveira; Adrian J Mulholland; Pornpan Pungpo;
PUBLISHED: 2024, SOURCE: Biochemistry, VOLUME: 63, ISSUE: 11
2
TITLE: Decrypting Allostery in Membrane-Bound K-Ras4B Using Complementary In Silico Approaches Based on Unbiased Molecular Dynamics Simulations Full Text
AUTHORS: Matteo Castelli; Filippo Marchetti; Sílvia Osuna; Sofia S F Oliveira; Adrian J Mulholland; Stefano A Serapian; Giorgio Colombo;
PUBLISHED: 2024, SOURCE: Journal of the American Chemical Society, VOLUME: 146, ISSUE: 1
AUTHORS: Matteo Castelli; Filippo Marchetti; Sílvia Osuna; Sofia S F Oliveira; Adrian J Mulholland; Stefano A Serapian; Giorgio Colombo;
PUBLISHED: 2024, SOURCE: Journal of the American Chemical Society, VOLUME: 146, ISSUE: 1
3
TITLE: Fluctuation Relations to Calculate Protein Redox Potentials from Molecular Dynamics Simulations Full Text
AUTHORS: Oliveira A.S.F.; Rubio J.; Noble C.E.M.; Anderson J.L.R.; Anders J.; Mulholland A.J.;
PUBLISHED: 2024, SOURCE: Journal of Chemical Theory and Computation, VOLUME: 20, ISSUE: 1
AUTHORS: Oliveira A.S.F.; Rubio J.; Noble C.E.M.; Anderson J.L.R.; Anders J.; Mulholland A.J.;
PUBLISHED: 2024, SOURCE: Journal of Chemical Theory and Computation, VOLUME: 20, ISSUE: 1
4
TITLE: Delineating redox cooperativity in water-soluble and membrane multiheme cytochromes through protein design
AUTHORS: Benjamin J Hardy; Paulina Dubiel; Ethan L Bungay; May Rudin; Christopher Williams; Christopher J Arthur; Matthew J Guberman-Pfeffer; Sofia S Oliveira; Paul Curnow; Ross L R Anderson;
PUBLISHED: 2024
AUTHORS: Benjamin J Hardy; Paulina Dubiel; Ethan L Bungay; May Rudin; Christopher Williams; Christopher J Arthur; Matthew J Guberman-Pfeffer; Sofia S Oliveira; Paul Curnow; Ross L R Anderson;
PUBLISHED: 2024
5
TITLE: Cystic Fibrosis Transmembrane Conductance Regulator (CFTR)-Targeted Therapeutics for Cystic Fibrosis
AUTHORS: Diana-Florentina Veselu; Han-I Yeh; Mayuree Rodrat; Jacob D Bradbury; Yanira Manzanares Fornies; Hongyu Li; Deborah K Shoemark; Sofia S F Oliveira; Tzyh-Chang Hwang; David N Sheppard;
PUBLISHED: 2024, SOURCE: Ion Channels as Targets in Drug Discovery
AUTHORS: Diana-Florentina Veselu; Han-I Yeh; Mayuree Rodrat; Jacob D Bradbury; Yanira Manzanares Fornies; Hongyu Li; Deborah K Shoemark; Sofia S F Oliveira; Tzyh-Chang Hwang; David N Sheppard;
PUBLISHED: 2024, SOURCE: Ion Channels as Targets in Drug Discovery
6
TITLE: Dynamic Behavior and Substrate Interactions of the Polymyxin Resistance Determinant MCR-1 Investigated by Extended Molecular Dynamics Simulations in the Membrane Environment
AUTHORS: Emily Lythell; Reynier Suardíaz; Philip Hinchliffe; Sofia Oliveira; Marc van der Kamp; James Spencer; Adrian Mulholland;
PUBLISHED: 2024
AUTHORS: Emily Lythell; Reynier Suardíaz; Philip Hinchliffe; Sofia Oliveira; Marc van der Kamp; James Spencer; Adrian Mulholland;
PUBLISHED: 2024
7
TITLE: Delineating redox cooperativity in water‐soluble and membrane multiheme cytochromes through protein design Full Text
AUTHORS: Benjamin J Hardy; Paulina Dubiel; Ethan L Bungay; May Rudin; Christopher Williams; Christopher J Arthur; Matthew J Guberman‐Pfeffer; Sofia Oliveira, A; Paul Curnow; Ross L R Anderson;
PUBLISHED: 2024, SOURCE: Protein Science, VOLUME: 33, ISSUE: 8
AUTHORS: Benjamin J Hardy; Paulina Dubiel; Ethan L Bungay; May Rudin; Christopher Williams; Christopher J Arthur; Matthew J Guberman‐Pfeffer; Sofia Oliveira, A; Paul Curnow; Ross L R Anderson;
PUBLISHED: 2024, SOURCE: Protein Science, VOLUME: 33, ISSUE: 8
8
TITLE: Allosteric modulation by the fatty acid site in the glycosylated SARS-CoV-2 spike
AUTHORS: Sofia S F Oliveira; Fiona L Kearns; Mia A Rosenfeld; Lorenzo Casalino; Imre Berger; Christiane Schaffitzel; Andrew D Davidson; Rommie E Amaro; Adrian J Mulholland;
PUBLISHED: 2024
AUTHORS: Sofia S F Oliveira; Fiona L Kearns; Mia A Rosenfeld; Lorenzo Casalino; Imre Berger; Christiane Schaffitzel; Andrew D Davidson; Rommie E Amaro; Adrian J Mulholland;
PUBLISHED: 2024
9
TITLE: Allosteric modulation by the fatty acid site in the glycosylated SARS-CoV-2 spike
AUTHORS: Sofia S F Oliveira; Fiona L Kearns; Mia A Rosenfeld; Lorenzo Casalino; Imre Berger; Christiane Schaffitzel; Andrew D Davidson; Rommie E Amaro; Adrian J Mulholland;
PUBLISHED: 2024
AUTHORS: Sofia S F Oliveira; Fiona L Kearns; Mia A Rosenfeld; Lorenzo Casalino; Imre Berger; Christiane Schaffitzel; Andrew D Davidson; Rommie E Amaro; Adrian J Mulholland;
PUBLISHED: 2024
10
TITLE: Dynamical responses predict a distal site that modulates activity in an antibiotic resistance enzyme
AUTHORS: Michael Beer; Ana Sofia F Oliveira; Catherine L Tooke; Philip Hinchliffe; Angie Tsz Yan Li; Balazs Balega; James Spencer; Adrian J Mulholland;
PUBLISHED: 2024, SOURCE: Chemical Science, VOLUME: 15, ISSUE: 41
AUTHORS: Michael Beer; Ana Sofia F Oliveira; Catherine L Tooke; Philip Hinchliffe; Angie Tsz Yan Li; Balazs Balega; James Spencer; Adrian J Mulholland;
PUBLISHED: 2024, SOURCE: Chemical Science, VOLUME: 15, ISSUE: 41
