Carlos Daniel Moutinho Machado
AuthID: R-000-QBJ
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TITLE: A kinetic model for curcumin production in Escherichia coli Full Text
AUTHORS: Daniel Machado; Ligia R Rodrigues; Isabel Rocha;
PUBLISHED: 2014, SOURCE: BIOSYSTEMS, VOLUME: 125
AUTHORS: Daniel Machado; Ligia R Rodrigues; Isabel Rocha;
PUBLISHED: 2014, SOURCE: BIOSYSTEMS, VOLUME: 125
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TITLE: Systematic Evaluation of Methods for Integration of Transcriptomic Data into Constraint-Based Models of Metabolism Full Text
AUTHORS: Machado, D; Herrgard, M;
PUBLISHED: 2014, SOURCE: PLoS Computational Biology, VOLUME: 10, ISSUE: 4
AUTHORS: Machado, D; Herrgard, M;
PUBLISHED: 2014, SOURCE: PLoS Computational Biology, VOLUME: 10, ISSUE: 4
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TITLE: Random sampling of elementary flux modes in large-scale metabolic networks Full Text
AUTHORS: Daniel Machado; Zita Soons; Kiran Raosaheb Patil; Eugenio C Ferreira ; Isabel Rocha ;
PUBLISHED: 2012, SOURCE: 11th European Conference on Computational Biology (ECCB) / Conference of the Intelligent Systems in Molecular Biology (ISMB) in BIOINFORMATICS, VOLUME: 28, ISSUE: 18
AUTHORS: Daniel Machado; Zita Soons; Kiran Raosaheb Patil; Eugenio C Ferreira ; Isabel Rocha ;
PUBLISHED: 2012, SOURCE: 11th European Conference on Computational Biology (ECCB) / Conference of the Intelligent Systems in Molecular Biology (ISMB) in BIOINFORMATICS, VOLUME: 28, ISSUE: 18
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TITLE: Exploring the gap between dynamic and constraint-based models of metabolism Full Text
AUTHORS: Daniel Machado; Rafael S Costa ; Eugenio C Ferreira ; Isabel Rocha ; Bruce Tidor;
PUBLISHED: 2012, SOURCE: METABOLIC ENGINEERING, VOLUME: 14, ISSUE: 2
AUTHORS: Daniel Machado; Rafael S Costa ; Eugenio C Ferreira ; Isabel Rocha ; Bruce Tidor;
PUBLISHED: 2012, SOURCE: METABOLIC ENGINEERING, VOLUME: 14, ISSUE: 2
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TITLE: MULTILEVEL DYNAMIC MODELING IN BIOLOGICAL SYSTEMS Application of Hybrid Petri Nets to Network Simulation
AUTHORS: Costa, RS ; Machado, D; Neves, AR; Vinga, S ;
PUBLISHED: 2012, SOURCE: International Conference on Bioinformatics Models, Methods and Algorithms (BIOINFORMATICS) in BIOINFORMATICS: PROCEEDINGS OF THE INTERNATIONAL CONFERENCE ON BIOINFORMATICS MODELS, METHODS AND ALGORITHMS
AUTHORS: Costa, RS ; Machado, D; Neves, AR; Vinga, S ;
PUBLISHED: 2012, SOURCE: International Conference on Bioinformatics Models, Methods and Algorithms (BIOINFORMATICS) in BIOINFORMATICS: PROCEEDINGS OF THE INTERNATIONAL CONFERENCE ON BIOINFORMATICS MODELS, METHODS AND ALGORITHMS
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TITLE: Critical perspective on the consequences of the limited availability of kinetic data in metabolic dynamic modelling
AUTHORS: Costa, RS ; Machado, D; Rocha, I ; Ferreira, EC ;
PUBLISHED: 2011, SOURCE: IET SYSTEMS BIOLOGY, VOLUME: 5, ISSUE: 3
AUTHORS: Costa, RS ; Machado, D; Rocha, I ; Ferreira, EC ;
PUBLISHED: 2011, SOURCE: IET SYSTEMS BIOLOGY, VOLUME: 5, ISSUE: 3
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TITLE: Modeling formalisms in Systems Biology Full Text
AUTHORS: Daniel Machado; Rafael S Costa ; Miguel Rocha ; Eugenio C Ferreira ; Bruce Tidor; Isabel Rocha ;
PUBLISHED: 2011, SOURCE: AMB EXPRESS, VOLUME: 1, ISSUE: 1
AUTHORS: Daniel Machado; Rafael S Costa ; Miguel Rocha ; Eugenio C Ferreira ; Bruce Tidor; Isabel Rocha ;
PUBLISHED: 2011, SOURCE: AMB EXPRESS, VOLUME: 1, ISSUE: 1
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TITLE: Hybrid dynamic modeling of Escherichia coli central metabolic network combining Michaelis-Menten and approximate kinetic equations Full Text
AUTHORS: Rafael S Costa ; Daniel Machado; Isabel Rocha ; Eugenio C Ferreira ;
PUBLISHED: 2010, SOURCE: BIOSYSTEMS, VOLUME: 100, ISSUE: 2
AUTHORS: Rafael S Costa ; Daniel Machado; Isabel Rocha ; Eugenio C Ferreira ;
PUBLISHED: 2010, SOURCE: BIOSYSTEMS, VOLUME: 100, ISSUE: 2
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TITLE: Evaluating the integration of proteomic data for the prediction of intracellular fluxes after knockout experiments
AUTHORS: Costa, RS ; Machado, D; Ferreira, EC ; Rocha, I ;
PUBLISHED: 2010, SOURCE: 11th International Symposium on Computer Applications in Biotechnology, CAB 2010 in IFAC Proceedings Volumes (IFAC-PapersOnline), VOLUME: 11, ISSUE: PART 1
AUTHORS: Costa, RS ; Machado, D; Ferreira, EC ; Rocha, I ;
PUBLISHED: 2010, SOURCE: 11th International Symposium on Computer Applications in Biotechnology, CAB 2010 in IFAC Proceedings Volumes (IFAC-PapersOnline), VOLUME: 11, ISSUE: PART 1
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TITLE: A Critical Review on Modelling Formalisms and Simulation Tools in Computational Biosystems
AUTHORS: Daniel Machado; Rafael S Costa ; Miguel Rocha ; Isabel Rocha ; Bruce Tidor; Eugenio C Ferreira ;
PUBLISHED: 2009, SOURCE: 10th International Work-Conference on Artificial Neural Networks (IWANN 2009) in DISTRIBUTED COMPUTING, ARTIFICIAL INTELLIGENCE, BIOINFORMATICS, SOFT COMPUTING, AND AMBIENT ASSISTED LIVING, PT II, PROCEEDINGS, VOLUME: 5518, ISSUE: PART 2
AUTHORS: Daniel Machado; Rafael S Costa ; Miguel Rocha ; Isabel Rocha ; Bruce Tidor; Eugenio C Ferreira ;
PUBLISHED: 2009, SOURCE: 10th International Work-Conference on Artificial Neural Networks (IWANN 2009) in DISTRIBUTED COMPUTING, ARTIFICIAL INTELLIGENCE, BIOINFORMATICS, SOFT COMPUTING, AND AMBIENT ASSISTED LIVING, PT II, PROCEEDINGS, VOLUME: 5518, ISSUE: PART 2
