31
TITLE: iRAGu: A Novel Inducible and Reversible Mouse Model for Ubiquitous Recombinase Activity
AUTHORS: Bonnet, M; Sarmento, LM; Martins, AC; Sobral, D; Silva, J; Demengeot, J;
PUBLISHED: 2017, SOURCE: FRONTIERS IN IMMUNOLOGY, VOLUME: 8, ISSUE: NOV
INDEXED IN: Scopus WOS CrossRef: 1
IN MY: ORCID
32
TITLE: Ensembl regulation resources  Full Text
AUTHORS: Daniel R Zerbino; Nathan Johnson; Thomas Juetteman; Dan Sheppard; Steven P Wilder; Ilias Lavidas; Michael Nuhn; Emily Perry; Quentin Raffaillac Desfosses; Daniel Sobral; Damian Keefe; Stefan Graef; Ikhlak Ahmed; Rhoda Kinsella; Bethan Pritchard; Simon Brent; Ridwan Amode; Anne Parker; Steven Trevanion; Ewan Birney; Ian Dunham; Paul Flicek; ...More
PUBLISHED: 2016, SOURCE: DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION, VOLUME: 2016
INDEXED IN: Scopus WOS CrossRef
IN MY: ORCID
33
TITLE: RAG Recombinase as a Selective Pressure for Genome Evolution
AUTHORS: Passagem Santos, D; Bonnet, M; Sobral, D; Trancoso, I; Silva, JG; Barreto, VM; Athanasiadis, A; Demengeot, J; Pereira Leal, JB;
PUBLISHED: 2016, SOURCE: GENOME BIOLOGY AND EVOLUTION, VOLUME: 8, ISSUE: 11
INDEXED IN: Scopus WOS CrossRef: 5
IN MY: ORCID
34
TITLE: A pipeline for the systematic identification of non-redundant full-ORF cDNAs for polymorphic and evolutionary divergent genomes: Application to the ascidian Ciona intestinalis  Full Text
AUTHORS: Gilchrist, MJ; Sobral, D; Khoueiry, P; Daian, F; Laporte, B; Patrushev, I; Matsumoto, J; Dewar, K; Hastings, KEM; Satou, Y; Lemaire, P; Rothbacher, U;
PUBLISHED: 2015, SOURCE: Developmental Biology, VOLUME: 404, ISSUE: 2
INDEXED IN: Scopus CrossRef
IN MY: ORCID
35
TITLE: Requirement for highly efficient pre-mRNA splicing during Drosophila early embryonic development
AUTHORS: Guilgur, LG; Prudencio, P; Sobral, D; Liszekova, D; Rosa, A; Martinho, RG;
PUBLISHED: 2014, SOURCE: eLife, VOLUME: 2014, ISSUE: 3
INDEXED IN: Scopus CrossRef
IN MY: ORCID
36
TITLE: The First Steps of Adaptation of Escherichia coli to the Gut Are Dominated by Soft Sweeps  Full Text
AUTHORS: Joao Barroso Batista; Ana Sousa; Marta Lourenco; Marie Louise Bergman; Daniel Sobral; Jocelyne Demengeot; Karina B Xavier; Isabel Gordo;
PUBLISHED: 2014, SOURCE: PLOS GENETICS, VOLUME: 10, ISSUE: 3
INDEXED IN: Scopus WOS
IN MY: ORCID
37
TITLE: The First Steps of Adaptation of Escherichia coli to the Gut Are Dominated by Soft Sweeps  Full Text
AUTHORS: João Barroso-Batista; Ana Sousa; Marta Lourenço; Marie-Louise Bergman; Daniel Sobral; Jocelyne Demengeot; Karina B Xavier; Isabel Gordo;
PUBLISHED: 2014, SOURCE: PLoS Genetics - PLoS Genet, VOLUME: 10, ISSUE: 3
INDEXED IN: CrossRef
IN MY: ORCID
38
TITLE: Requirement for highly efficient pre-mRNA splicing during Drosophila early embryonic development
AUTHORS: Leonardo Gastón Guilgur; Pedro Prudêncio; Daniel Sobral; Denisa Liszekova; André Rosa; Rui Gonçalo Martinho;
PUBLISHED: 2014, SOURCE: eLife, VOLUME: 2014, ISSUE: 3
INDEXED IN: Scopus
IN MY: ORCID
39
TITLE: Ensembl 2013
AUTHORS: Paul Flicek; Ikhlak Ahmed; Ridwan R Amode; Daniel Barrell; Kathryn Beal; Simon Brent; Denise Carvalho Silva; Peter Clapham; Guy Coates; Susan Fairley; Stephen Fitzgerald; Laurent Gil; Carlos García Girón; Leo Gordon; Thibaut Hourlier; Sarah Hunt; Thomas Juettemann; Andreas K Kähäri; Stephen Keenan; Monika Komorowska; Eugene Kulesha; Ian Longden; Thomas Maurel; William M McLaren; Matthieu Muffato; Rishi Nag; Bert Overduin; Miguel Pignatelli; Bethan Pritchard; Emily Pritchard; Harpreet Singh Riat; Graham R S Ritchie; Magali Ruffier; Michael Schuster; Daniel Sheppard; Daniel Sobral; Kieron Taylor; Anja Thormann; Stephen Trevanion; Simon White; Steven P Wilder; Bronwen L Aken; Ewan Birney; Fiona Cunningham; Ian Dunham; Jennifer Harrow; Javier Herrero; Tim J P Hubbard; Nathan Johnson; Rhoda Kinsella; Anne Parker; Giulietta Spudich; Andy Yates; Amonida Zadissa; Stephen M J Searle; ...More
PUBLISHED: 2013, SOURCE: Nucleic Acids Research, VOLUME: 41, ISSUE: D1
INDEXED IN: Scopus
IN MY: ORCID
40
TITLE: An integrated encyclopedia of DNA elements in the human genome  Full Text
AUTHORS: Ian Dunham; Anshul Kundaje; Shelley F Aldred; Patrick J Collins; CarrieA. Davis; Francis Doyle; Charles B Epstein; Seth Frietze; Jennifer Harrow; Rajinder Kaul; Jainab Khatun; Bryan R Lajoie; Stephen G Landt; Bum Kyu Lee; Florencia Pauli; Kate R Rosenbloom; Peter Sabo; Alexias Safi; Amartya Sanyal; Noam Shoresh; Jeremy M Simon; Lingyun Song; Nathan D Trinklein; Robert C Altshuler; Ewan Birney; James B Brown; Chao Cheng; Sarah Djebali; Xianjun J Dong; Ian Dunham; Jason Ernst; Terrence S Furey; Mark Gerstein; Belinda Giardine; Melissa Greven; Ross C Hardison; Robert S Harris; Javier Herrero; Michael M Hoffman; Sowmya Iyer; Manolis Kellis; Jainab Khatun; Pouya Kheradpour; Anshul Kundaje; Timo Lassmann; Qunhua H Li; Xinying Lin; Georgi K Marinov; Angelika Merkel; Ali Mortazavi; Stephen C J Parker; Timothy E Reddy; Joel Rozowsky; Felix Schlesinger; Robert E Thurman; Jie Wang; Lucas D Ward; Troy W Whitfield; Steven P Wilder; Weisheng Wu; Hualin L S Xi; Kevin Y Yip; Jiali L Zhuang; Bradley E Bernstein; Ewan Birney; Ian Dunham; Eric D Green; Chris Gunter; Michael Snyder; Michael J Pazin; Rebecca F Lowdon; Laura A L Dillon; Leslie B Adams; Caroline J Kelly; Julia Zhang; Judith R Wexler; Eric D Green; Peter J Good; Elise A Feingold; Bradley E Bernstein; Ewan Birney; Gregory E Crawford; Job Dekker; Laura Elnitski; Peggy J Farnham; Mark Gerstein; Morgan C Giddings; Thomas R Gingeras; Eric D Green; Roderic Guigo; Ross C Hardison; Timothy J Hubbard; Manolis Kellis; James J Kent; Jason D Lieb; Elliott H Margulies; Richard M Myers; Michael Snyder; John A Stamatoyannopoulos; Scott A Tenenbaum; Zhiping P Weng; Kevin P White; Barbara Wold; Jainab Khatun; Yanbao Yu; John Wrobel; Brian A Risk; Harsha P Gunawardena; Heather C Kuiper; Christopher W Maier; Ling Xie; Xian Chen; Morgan C Giddings; Bradley E Bernstein; Charles B Epstein; Noam Shoresh; Jason Ernst; Pouya Kheradpour; Tarjei S Mikkelsen; Shawn Gillespie; Alon Goren; Oren Ram; Xiaolan L Zhang; Li Wang; Robbyn Issner; Michael J Coyne; Timothy Durham; Manching Ku; Thanh Truong; Lucas D Ward; Robert C Altshuler; Matthew L Eaton; Manolis Kellis; Sarah Djebali; Carrie A Davis; Angelika Merkel; Alex Dobin; Timo Lassmann; Ali Mortazavi; Andrea Tanzer; Julien Lagarde; Wei Lin; Felix Schlesinger; Chenghai H Xue; Georgi K Marinov; Jainab Khatun; Brian A Williams; Chris Zaleski; Joel Rozowsky; Maik Roeder; Felix Kokocinski; Rehab F Abdelhamid; Tyler Alioto; Igor Antoshechkin; Michael T Baer; Philippe Batut; Ian Bell; Kimberly Bell; Sudipto Chakrabortty; Xian Chen; Jacqueline Chrast; Joao Curado; Thomas Derrien; Jorg Drenkow; Erica Dumais; Jackie Dumais; Radha Duttagupta; Megan Fastuca; Kata Fejes Toth; Pedro Ferreira ; Sylvain Foissac; Melissa J Fullwood; Hui Gao; David Gonzalez; Assaf Gordon; Harsha P Gunawardena; Cedric Howald; Sonali Jha; Rory Johnson; Philipp Kapranov; Brandon King; Colin Kingswood; Guoliang L Li; Oscar J Luo; Eddie Park; Jonathan B Preall; Kimberly Presaud; Paolo Ribeca; Brian A Risk; Daniel Robyr; Xiaoan A Ruan; Michael Sammeth; Kuljeet Singh Sandhu; Lorain Schaeffer; Lei Hoon See; Atif Shahab; Jorgen Skancke; Ana Maria Suzuki; Hazuki Takahashi; Hagen Tilgner; Diane Trout; Nathalie Walters; Huaien E Wang; John Wrobel; Yanbao B Yu; Yoshihide Hayashizaki; Jennifer Harrow; Mark Gerstein; Timothy J Hubbard; Alexandre Reymond; Stylianos E Antonarakis; Gregory J Hannon; Morgan C Giddings; Yijun J Ruan; Barbara Wold; Piero Carninci; Roderic Guigo; Thomas R Gingeras; Kate R Rosenbloom; Cricket A Sloan; Katrina Learned; Venkat S Malladi; Matthew C Wong; Galtp. Barber; Melissa S Cline; Timothy R Dreszer; Steven G Heitner; Donna Karolchik; James J Kent; Vanessa M Kirkup; Laurence R Meyer; Jeffrey C Long; Morgan Maddren; Brian J Raney; Terrence S Furey; Lingyun Y Song; Linda L Grasfeder; Paul G Giresi; Bum Kyu Lee; Anna Battenhouse; Nathan C Sheffield; Jeremy M Simon; Kimberly A Showers; Alexias Safi; Darin London; Akshay A Bhinge; Christopher Shestak; Matthew R Schaner; Seul Ki Kim; Zhuzhu Z Z Zhang; Piotr A Mieczkowski; Joanna O Mieczkowska; Zheng Liu; Ryan M McDaniell; Yunyun Y Ni; Naim U Rashid; Min Jae Kim; Sheera Adar; Zhancheng C Zhang; Tianyuan Y Wang; Deborah Winter; Damian Keefe; Ewan Birney; Vishwanath R Iyer; Jason D Lieb; Gregory E Crawford; Guoliang L Li; Kuljeet Singh Sandhu; Meizhen Z Zheng; Ping Wang; Oscar J Luo; Atif Shahab; Melissa J Fullwood; Xiaoan A Ruan; Yijun J Ruan; Richard M Myers; Florencia Pauli; Brian A Williams; Jason Gertz; Georgi K Marinov; Timothy E Reddy; Jost Vielmetter; Christopher C Partridge; Diane Trout; Katherine E Varley; Clarke Gasper; Anita Bansal; Shirley Pepke; Preti Jain; Henry Amrhein; Kevin M Bowling; Michael Anaya; Marie K Cross; Brandon King; Michael A Muratet; Igor Antoshechkin; Kimberly M Newberry; Kenneth Mccue; Amy S Nesmith; Katherine I Fisher Aylor; Barbara Pusey; Gilberto DeSalvo; Stephanie L Parker; Sreeram Balasubramanian; Nicholas S Davis; Sarah K Meadows; Tracy Eggleston; Chris Gunter; Scott S Newberry; Shawn E Levy; Devin M Absher; Ali Mortazavi; Wing H Wong; Barbara Wold; Matthew J Blow; Axel Visel; Len A Pennachio; Laura Elnitski; Elliott H Margulies; Stephen C J Parker; Hanna M Petrykowska; Alexej Abyzov; Bronwen Aken; Daniel Barrell; Gemma Barson; Andrew Berry; Alexandra Bignell; Veronika Boychenko; Giovanni Bussotti; Jacqueline Chrast; Claire Davidson; Thomas Derrien; Gloria Despacio Reyes; Mark Diekhans; Iakes Ezkurdia; Adam Frankish; James Gilbert; Jose Manuel Gonzalez; Ed Griffiths; Rachel Harte; David A Hendrix; Cedric Howald; Toby Hunt; Irwin Jungreis; Mike Kay; Ekta Khurana; Felix Kokocinski; Jing Leng; Michael F Lin; Jane Loveland; Zhi Lu; Deepa Manthravadi; Marco Mariotti; Jonathan Mudge; Gaurab Mukherjee; Cedric Notredame; Baikang K Pei; Jose Manuel Rodriguez; Gary Saunders; Andrea Sboner; Stephen Searle; Cristina Sisu; Catherine Snow; Charlie Steward; Andrea Tanzer; Electra Tapanari; Michael L Tress; Marijke J van Baren; Nathalie Walters; Stefan Washietl; Laurens Wilming; Amonida Zadissa; Zhengdong D Zhang; Michael Brent; David Haussler; Manolis Kellis; Alfonso Valencia; Mark Gerstein; Alexandre Reymond; Roderic Guigo; Jennifer Harrow; Timothy J Hubbard; Stephen G Landt; Seth Frietze; Alexej Abyzov; Nick Addleman; Roger P Alexander; Raymond K Auerbach; Suganthi Balasubramanian; Keith Bettinger; Nitin Bhardwaj; Alan P Boyle; Alina R Cao; Philip Cayting; Alexandra Charos; Yong Cheng; Chao Cheng; Catharine Eastman; Ghia Euskirchen; Joseph D Fleming; Fabian Grubert; Lukas Habegger; Manoj Hariharan; Arif Harmanci; Sushma Iyengar; Victor X Jin; Konrad J Karczewski; Maya Kasowski; Phil Lacroute; Hugo Lam; Nathan Lamarre Vincent; Jing Leng; Jin Lian; Marianne Lindahl Allen; Renqiang Q Min; Benoit Miotto; Hannah Monahan; Zarmik Moqtaderi; Xinmeng M J Mu; Henriette O'Geen; Zhengqing Q Ouyang; Dorrelyn Patacsil; Baikang K Pei; Debasish Raha; Lucia Ramirez; Brian Reed; Joel Rozowsky; Andrea Sboner; Minyi Y Shi; Cristina Sisu; Teri Slifer; Heather Witt; Linfeng F Wu; Xiaoqin Q Xu; Koon Kiu Yan; Xinqiong Q Yang; Kevin Y Yip; Zhengdong D Zhang; Kevin Struhl; Sherman M Weissman; Mark Gerstein; Peggy J Farnham; Michael Snyder; Scott A Tenenbaum; Luiz O Penalva; Francis Doyle; Subhradip Karmakar; Stephen G Landt; Raj R Bhanvadia; Alina Choudhury; Marc Domanus; Lijia J Ma; Jennifer Moran; Dorrelyn Patacsil; Teri Slifer; Alec Victorsen; Xinqiong Q Yang; Michael Snyder; Kevin P White; Thomas Auer; Lazaro Centanin; Michael Eichenlaub; Franziska Gruhl; Stephan Heermann; Burkhard Hoeckendorf; Daigo Inoue; Tanja Kellner; Stephan Kirchmaier; Claudia Mueller; Robert Reinhardt; Lea Schertel; Stephanie Schneider; Rebecca Sinn; Beate Wittbrodt; Jochen Wittbrodt; Zhiping P Weng; Troy W Whitfield; Jie Wang; Patrick J Collins; Shelley F Aldred; Nathan D Trinklein; Christopher C Partridge; Richard M Myers; Job Dekker; Gaurav Jain; Bryan R Lajoie; Amartya Sanyal; Gayathri Balasundaram; Daniel L Bates; Rachel Byron; Theresa K Canfield; Morgan J Diegel; Douglas Dunn; Abigail K Ebersol; Tristan Frum; Kavita Garg; Erica Gist; Scott S Hansen; Lisa Boatman; Eric Haugen; Richard Humbert; Gaurav Jain; Audra K Johnson; Ericka M Johnson; Tattyana V Kutyavin; Bryan R Lajoie; Kristen Lee; Dimitra Lotakis; Matthew T Maurano; Shane J Neph; Fiedencio V Neri; Eric D Nguyen; Hongzhu Z Qu; Alex P Reynolds; Vaughn Roach; Eric Rynes; Peter Sabo; Minerva E Sanchez; Richard S Sandstrom; Amartya Sanyal; Anthony O Shafer; Andrew B Stergachis; Sean Thomas; Robert E Thurman; Benjamin Vernot; Jeff Vierstra; Shinny Vong; Hao Wang; Molly A Weaver; Yongqi Q Yan; Miaohua H Zhang; Joshua M Akey; Michael Bender; Michael O Dorschner; Mark Groudine; Michael J MacCoss; Patrick Navas; George Stamatoyannopoulos; Rajinder Kaul; Job Dekker; John A Stamatoyannopoulos; Ian Dunham; Kathryn Beal; Alvis Brazma; Paul Flicek; Javier Herrero; Nathan Johnson; Damian Keefe; Margus Lukk; Nicholas M Luscombe; Daniel Sobral; Juan M Vaquerizas; Steven P Wilder; Serafim Batzoglou; Arend Sidow; Nadine Hussami; Sofia Kyriazopoulou Panagiotopoulou; Max W Libbrecht; Marc A Schaub; Anshul Kundaje; Ross C Hardison; Webb Miller; Belinda Giardine; Robert S Harris; Weisheng Wu; Peter J Bickel; Balazs Banfai; Nathan P Boley; James B Brown; Haiyan Y Huang; Qunhua H Li; Jingyi Jessica Li; William Stafford Noble; Jeffrey A Bilmes; Orion J Buske; Michael M Hoffman; Avinash D Sahu; Peter V Kharchenko; Peter J Park; Dannon Baker; James Taylor; Zhiping P Weng; Sowmya Iyer; Xianjun J Dong; Melissa Greven; Xinying Y Lin; Jie Wang; Hualin L S Xi; Jiali L Zhuang; Mark Gerstein; Roger P Alexander; Suganthi Balasubramanian; Chao Cheng; Arif Harmanci; Lucas Lochovsky; Renqiang Min; Xinmeng M J Mu; Joel Rozowsky; Koon Kiu Yan; Kevin Y Yip; Ewan Birney; ...More
PUBLISHED: 2012, SOURCE: NATURE, VOLUME: 489, ISSUE: 7414
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