Machine Learning Detects Pan-Cancer Ras Pathway Activation in The Cancer Genome Atlas

AuthID
P-014-M92
738
Author(s)
Way, GP
·
Sanchez-Vega, F
·
La, K
·
Armenia, J
·
Chatila, WK
·
Luna, A
·
Sander, C
·
Cherniack, AD
·
Mina, M
·
Ciriello, G
·
[+243]·
[+475]·
Govindan, R
·
Heath, S
·
Ley, T
·
Van Tine, B
·
Westervelt, P
·
Rubin, MA
·
Lee, JI
·
Aredes, ND
·
Mariamidze, A
Document Type
Article
Year published
2018
Published
in Cell Reports, ISSN: 2211-1247
Volume: 23, Issue: 1, Pages: 172-180.e3
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ISSN: 2211-1247
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Name Order Name   Name Order Name   Name Order Name
1 Way, GP;   2 Sanchez-Vega, F;   3 La, K;
4 Armenia, J;   5 Chatila, WK;   6 Luna, A;
7 Sander, C;   8 Cherniack, AD;   9 Mina, M;
10 Ciriello, G;   11 Schultz, N;   12 Sanchez, Y;
13 Greene, CS;   14 Caesar-Johnson, SJ;   15 Demchok, JA;
16 Felau, I;   17 Kasapi, M;   18 Ferguson, ML;
19 Hutter, CM;   20 Sofia, HJ;   21 Tarnuzzer, R;
22 Wang, Z;   23 Yang, L;   24 Zenklusen, JC;
25 Zhang, J(;   26 Chudamani, S;   27 Liu, J;
28 Lolla, L;   29 Naresh, R;   30 Pihl, T;
31 Sun, Q;   32 Wan, Y;   33 Wu, Y;
34 Cho, J;   35 DeFreitas, T;   36 Frazer, S;
37 Gehlenborg, N;   38 Getz, G;   39 Heiman, DI;
40 Kim, J;   41 Lawrence, MS;   42 Lin, P;
43 Meier, S;   44 Noble, MS;   45 Saksena, G;
46 Voet, D;   47 Zhang, H;   48 Bernard, B;
49 Chambwe, N;   50 Dhankani, V;   51 Knijnenburg, T;
52 Kramer, R;   53 Leinonen, K;   54 Liu, Y;
55 Miller, M;   56 Reynolds, S;   57 Shmulevich, I;
58 Thorsson, V;   59 Zhang, W;   60 Akbani, R;
61 Broom, BM;   62 Hegde, AM;   63 Ju, Z;
64 Kanchi, RS;   65 Korkut, A;   66 Li, J;
67 Liang, H;   68 Ling, S;   69 Liu, W;
70 Lu, Y;   71 Mills, GB;   72 Ng, K;
73 Rao, A;   74 Ryan, M;   75 Wang, J;
76 Weinstein, JN;   77 Zhang, J;   78 Abeshouse, A;
79 Armenia, J;   80 Chakravarty, D;   81 Chatila, WK;
82 de Bruijn, I;   83 Gao, J;   84 Gross, BE;
85 Heins, ZJ;   86 Kundra, R;   87 La, K;
88 Ladanyi, M;   89 Luna, A;   90 Nissan, MG;
91 Ochoa, A;   92 Phillips, SM;   93 Reznik, E;
94 Sanchez-Vega, F;   95 Sander, C;   96 Schultz, N;
97 Sheridan, R;   98 Sumer, SO;   99 Sun, Y;
100 Taylor, BS;   101 Wang, J;   102 Zhang, H;
103 Anur, P;   104 Peto, M;   105 Spellman, P;
106 Benz, C;   107 Stuart, JM;   108 Wong, CK;
109 Yau, C;   110 Hayes, DN;   111 Parker, JS;
112 Wilkerson, MD;   113 Ally, A;   114 Balasundaram, M;
115 Bowlby, R;   116 Brooks, D;   117 Carlsen, R;
118 Chuah, E;   119 Dhalla, N;   120 Holt, R;
121 Jones, SJ;   122 Kasaian, K;   123 Lee, D;
124 Ma, Y;   125 Marra, MA;   126 Mayo, M;
127 Moore, RA;   128 Mungall, AJ;   129 Mungall, K;
130 Robertson, AG;   131 Sadeghi, S;   132 Schein, JE;
133 Sipahimalani, P;   134 Tam, A;   135 Thiessen, N;
136 Tse, K;   137 Wong, T;   138 Berger, AC;
139 Beroukhim, R;   140 Cherniack, AD;   141 Cibulskis, C;
142 Gabriel, SB;   143 Gao, GF;   144 Ha, G;
145 Meyerson, M;   146 Schumacher, SE;   147 Shih, J;
148 Kucherlapati, MH;   149 Kucherlapati, RS;   150 Baylin, S;
151 Cope, L;   152 Danilova, L;   153 Bootwalla, MS;
154 Lai, PH;   155 Maglinte, DT;   156 Van Den Berg, DJ;
157 Weisenberger, DJ;   158 Auman, JT;   159 Balu, S;
160 Bodenheimer, T;   161 Fan, C;   162 Hoadley, KA;
163 Hoyle, AP;   164 Jefferys, SR;   165 Jones, CD;
166 Meng, S;   167 Mieczkowski, PA;   168 Mose, LE;
169 Perou, AH;   170 Perou, CM;   171 Roach, J;
172 Shi, Y;   173 Simons, JV;   174 Skelly, T;
175 Soloway, MG;   176 Tan, D;   177 Veluvolu, U;
178 Fan, H;   179 Hinoue, T;   180 Laird, PW;
181 Shen, H;   182 Zhou, W;   183 Bellair, M;
184 Chang, K;   185 Covington, K;   186 Creighton, CJ;
187 Dinh, H;   188 Doddapaneni, H;   189 Donehower, LA;
190 Drummond, J;   191 Gibbs, RA;   192 Glenn, R;
193 Hale, W;   194 Han, Y;   195 Hu, J;
196 Korchina, V;   197 Lee, S;   198 Lewis, L;
199 Li, W;   200 Liu, X;   201 Morgan, M;
202 Morton, D;   203 Muzny, D;   204 Santibanez, J;
205 Sheth, M;   206 Shinbrot, E;   207 Wang, L;
208 Wang, M;   209 Wheeler, DA;   210 Xi, L;
211 Zhao, F;   212 Hess, J;   213 Appelbaum, EL;
214 Bailey, M;   215 Cordes, MG;   216 Ding, L;
217 Fronick, CC;   218 Fulton, LA;   219 Fulton, RS;
220 Kandoth, C;   221 Mardis, ER;   222 McLellan, MD;
223 Miller, CA;   224 Schmidt, HK;   225 Wilson, RK;
226 Crain, D;   227 Curley, E;   228 Gardner, J;
229 Lau, K;   230 Mallery, D;   231 Morris, S;
232 Paulauskis, J;   233 Penny, R;   234 Shelton, C;
235 Shelton, T;   236 Sherman, M;   237 Thompson, E;
238 Yena, P;   239 Bowen, J;   240 Gastier-Foster, JM;
241 Gerken, M;   242 Leraas, KM;   243 Lichtenberg, TM;
244 Ramirez, NC;   245 Wise, L;   246 Zmuda, E;
247 Corcoran, N;   248 Costello, T;   249 Hovens, C;
250 Carvalho, AL;   251 de Carvalho, AC;   252 Fregnani, JH;
253 Longatto-Filho, A;   254 Reis, RM;   255 Scapulatempo-Neto, C;
256 Silveira, HC;   257 Vidal, DO;   258 Burnette, A;
259 Eschbacher, J;   260 Hermes, B;   261 Noss, A;
262 Singh, R;   263 Anderson, ML;   264 Castro, PD;
265 Ittmann, M;   266 Huntsman, D;   267 Kohl, B;
268 Le, X;   269 Thorp, R;   270 Andry, C;
271 Duffy, ER;   272 Lyadov, V;   273 Paklina, O;
274 Setdikova, G;   275 Shabunin, A;   276 Tavobilov, M;
277 McPherson, C;   278 Warnick, R;   279 Berkowitz, R;
280 Cramer, D;   281 Feltmate, C;   282 Horowitz, N;
283 Kibel, A;   284 Muto, M;   285 Raut, CP;
286 Malykh, A;   287 Barnholtz-Sloan, JS;   288 Barrett, W;
289 Devine, K;   290 Fulop, J;   291 Ostrom, QT;
292 Shimmel, K;   293 Wolinsky, Y;   294 Sloan, AE;
295 De Rose, A;   296 Giuliante, F;   297 Goodman, M;
298 Karlan, BY;   299 Hagedorn, CH;   300 Eckman, J;
301 Harr, J;   302 Myers, J;   303 Tucker, K;
304 Zach, LA;   305 Deyarmin, B;   306 Hu, H;
307 Kvecher, L;   308 Larson, C;   309 Mural, RJ;
310 Somiari, S;   311 Vicha, A;   312 Zelinka, T;
313 Bennett, J;   314 Iacocca, M;   315 Rabeno, B;
316 Swanson, P;   317 Latour, M;   318 Lacombe, L;
319 Têtu, B;   320 Bergeron, A;   321 McGraw, M;
322 Staugaitis, SM;   323 Chabot, J;   324 Hibshoosh, H;
325 Sepulveda, A;   326 Su, T;   327 Wang, T;
328 Potapova, O;   329 Voronina, O;   330 Desjardins, L;
331 Mariani, O;   332 Roman-Roman, S;   333 Sastre, X;
334 Stern, M;   335 Cheng, F;   336 Signoretti, S;
337 Berchuck, A;   338 Bigner, D;   339 Lipp, E;
340 Marks, J;   341 McCall, S;   342 McLendon, R;
343 Secord, A;   344 Sharp, A;   345 Behera, M;
346 Brat, DJ;   347 Chen, A;   348 Delman, K;
349 Force, S;   350 Khuri, F;   351 Magliocca, K;
352 Maithel, S;   353 Olson, JJ;   354 Owonikoko, T;
355 Pickens, A;   356 Ramalingam, S;   357 Shin, DM;
358 Sica, G;   359 Van Meir, EG;   360 Zhang, H;
361 Eijckenboom, W;   362 Gillis, A;   363 Korpershoek, E;
364 Looijenga, L;   365 Oosterhuis, W;   366 Stoop, H;
367 van Kessel, KE;   368 Zwarthoff, EC;   369 Calatozzolo, C;
370 Cuppini, L;   371 Cuzzubbo, S;   372 DiMeco, F;
373 Finocchiaro, G;   374 Mattei, L;   375 Perin, A;
376 Pollo, B;   377 Chen, C;   378 Houck, J;
379 Lohavanichbutr, P;   380 Hartmann, A;   381 Stoehr, C;
382 Stoehr, R;   383 Taubert, H;   384 Wach, S;
385 Wullich, B;   386 Kycler, W;   387 Murawa, D;
388 Wiznerowicz, M;   389 Chung, K;   390 Edenfield, WJ;
391 Martin, J;   392 Baudin, E;   393 Bubley, G;
394 Bueno, R;   395 De Rienzo, A;   396 Richards, WG;
397 Kalkanis, S;   398 Mikkelsen, T;   399 Noushmehr, H;
400 Scarpace, L;   401 Girard, N;   402 Aymerich, M;
403 Campo, E;   404 Giné, E;   405 Guillermo, AL;
406 Van Bang, N;   407 Hanh, PT;   408 Phu, BD;
409 Tang, Y;   410 Colman, H;   411 Evason, K;
412 Dottino, PR;   413 Martignetti, JA;   414 Gabra, H;
415 Juhl, H;   416 Akeredolu, T;   417 Stepa, S;
418 Hoon, D;   419 Ahn, K;   420 Kang, KJ;
421 Beuschlein, F;   422 Breggia, A;   423 Birrer, M;
424 Bell, D;   425 Borad, M;   426 Bryce, AH;
427 Castle, E;   428 Chandan, V;   429 Cheville, J;
430 Copland, JA;   431 Farnell, M;   432 Flotte, T;
433 Giama, N;   434 Ho, T;   435 Kendrick, M;
436 Kocher, J;   437 Kopp, K;   438 Moser, C;
439 Nagorney, D;   440 O’Brien, D;   441 O’Neill, BP;
442 Patel, T;   443 Petersen, G;   444 Que, F;
445 Rivera, M;   446 Roberts, L;   447 Smallridge, R;
448 Smyrk, T;   449 Stanton, M;   450 Thompson, RH;
451 Torbenson, M;   452 Yang, JD;   453 Zhang, L;
454 Brimo, F;   455 Ajani, JA;   456 Gonzalez, AMA;
457 Behrens, C;   458 Bondaruk, J;   459 Broaddus, R;
460 Czerniak, B;   461 Esmaeli, B;   462 Fujimoto, J;
463 Gershenwald, J;   464 Guo, C;   465 Lazar, AJ;
466 Logothetis, C;   467 Meric-Bernstam, F;   468 Moran, C;
469 Ramondetta, L;   470 Rice, D;   471 Sood, A;
472 Tamboli, P;   473 Thompson, T;   474 Troncoso, P;
475 Tsao, A;   476 Wistuba, I;   477 Carter, C;
478 Haydu, L;   479 Hersey, P;   480 Jakrot, V;
481 Kakavand, H;   482 Kefford, R;   483 Lee, K;
484 Long, G;   485 Mann, G;   486 Quinn, M;
487 Saw, R;   488 Scolyer, R;   489 Shannon, K;
490 Spillane, A;   491 Stretch, J;   492 Synott, M;
493 Thompson, J;   494 Wilmott, J;   495 Al-Ahmadie, H;
496 Chan, TA;   497 Ghossein, R;   498 Gopalan, A;
499 Levine, DA;   500 Reuter, V;   501 Singer, S;
502 Singh, B;   503 Tien, NV;   504 Broudy, T;
505 Mirsaidi, C;   506 Nair, P;   507 Drwiega, P;
508 Miller, J;   509 Smith, J;   510 Zaren, H;
511 Park, J;   512 Hung, NP;   513 Kebebew, E;
514 Linehan, WM;   515 Metwalli, AR;   516 Pacak, K;
517 Pinto, PA;   518 Schiffman, M;   519 Schmidt, LS;
520 Vocke, CD;   521 Wentzensen, N;   522 Worrell, R;
523 Yang, H;   524 Moncrieff, M;   525 Goparaju, C;
526 Melamed, J;   527 Pass, H;   528 Botnariuc, N;
529 Caraman, I;   530 Cernat, M;   531 Chemencedji, I;
532 Clipca, A;   533 Doruc, S;   534 Gorincioi, G;
535 Mura, S;   536 Pirtac, M;   537 Stancul, I;
538 Tcaciuc, D;   539 Albert, M;   540 Alexopoulou, I;
541 Arnaout, A;   542 Bartlett, J;   543 Engel, J;
544 Gilbert, S;   545 Parfitt, J;   546 Sekhon, H;
547 Thomas, G;   548 Rassl, DM;   549 Rintoul, RC;
550 Bifulco, C;   551 Tamakawa, R;   552 Urba, W;
553 Hayward, N;   554 Timmers, H;   555 Antenucci, A;
556 Facciolo, F;   557 Grazi, G;   558 Marino, M;
559 Merola, R;   560 de Krijger, R;   561 Gimenez-Roqueplo, A;
562 Piché, A;   563 Chevalier, S;   564 McKercher, G;
565 Birsoy, K;   566 Barnett, G;   567 Brewer, C;
568 Farver, C;   569 Naska, T;   570 Pennell, NA;
571 Raymond, D;   572 Schilero, C;   573 Smolenski, K;
574 Williams, F;   575 Morrison, C;   576 Borgia, JA;
577 Liptay, MJ;   578 Pool, M;   579 Seder, CW;
580 Junker, K;   581 Omberg, L;   582 Dinkin, M;
583 Manikhas, G;   584 Alvaro, D;   585 Bragazzi, MC;
586 Cardinale, V;   587 Carpino, G;   588 Gaudio, E;
589 Chesla, D;   590 Cottingham, S;   591 Dubina, M;
592 Moiseenko, F;   593 Dhanasekaran, R;   594 Becker, K;
595 Janssen, K;   596 Slotta-Huspenina, J;   597 Abdel-Rahman, MH;
598 Aziz, D;   599 Bell, S;   600 Cebulla, CM;
601 Davis, A;   602 Duell, R;   603 Elder, JB;
604 Hilty, J;   605 Kumar, B;   606 Lang, J;
607 Lehman, NL;   608 Mandt, R;   609 Nguyen, P;
610 Pilarski, R;   611 Rai, K;   612 Schoenfield, L;
613 Senecal, K;   614 Wakely, P;   615 Hansen, P;
616 Lechan, R;   617 Powers, J;   618 Tischler, A;
619 Grizzle, WE;   620 Sexton, KC;   621 Kastl, A;
622 Henderson, J;   623 Porten, S;   624 Waldmann, J;
625 Fassnacht, M;   626 Asa, SL;   627 Schadendorf, D;
628 Couce, M;   629 Graefen, M;   630 Huland, H;
631 Sauter, G;   632 Schlomm, T;   633 Simon, R;
634 Tennstedt, P;   635 Olabode, O;   636 Nelson, M;
637 Bathe, O;   638 Carroll, PR;   639 Chan, JM;
640 Disaia, P;   641 Glenn, P;   642 Kelley, RK;
643 Landen, CN;   644 Phillips, J;   645 Prados, M;
646 Simko, J;   647 Smith-McCune, K;   648 VandenBerg, S;
649 Roggin, K;   650 Fehrenbach, A;   651 Kendler, A;
652 Sifri, S;   653 Steele, R;   654 Jimeno, A;
655 Carey, F;   656 Forgie, I;   657 Mannelli, M;
658 Carney, M;   659 Hernandez, B;   660 Campos, B;
661 Herold-Mende, C;   662 Jungk, C;   663 Unterberg, A;
664 von Deimling, A;   665 Bossler, A;   666 Galbraith, J;
667 Jacobus, L;   668 Knudson, M;   669 Knutson, T;
670 Ma, D;   671 Milhem, M;   672 Sigmund, R;
673 Godwin, AK;   674 Madan, R;   675 Rosenthal, HG;
676 Adebamowo, C;   677 Adebamowo, SN;   678 Boussioutas, A;
679 Beer, D;   680 Giordano, T;   681 Mes-Masson, A;
682 Saad, F;   683 Bocklage, T;   684 Landrum, L;
685 Mannel, R;   686 Moore, K;   687 Moxley, K;
688 Postier, R;   689 Walker, J;   690 Zuna, R;
691 Feldman, M;   692 Valdivieso, F;   693 Dhir, R;
694 Luketich, J;   695 Pinero, EMM;   696 Quintero-Aguilo, M;
697 Carlotti, CG;   698 Dos Santos, JS;   699 Kemp, R;
700 Sankarankuty, A;   701 Tirapelli, D;   702 Catto, J;
703 Agnew, K;   704 Swisher, E;   705 Creaney, J;
706 Robinson, B;   707 Shelley, CS;   708 Godwin, EM;
709 Kendall, S;   710 Shipman, C;   711 Bradford, C;
712 Carey, T;   713 Haddad, A;   714 Moyer, J;
715 Peterson, L;   716 Prince, M;   717 Rozek, L;
718 Wolf, G;   719 Bowman, R;   720 Fong, KM;
721 Yang, I;   722 Korst, R;   723 Rathmell, WK;
724 Fantacone-Campbell, JL;   725 Hooke, JA;   726 Kovatich, AJ;
727 Shriver, CD;   728 DiPersio, J;   729 Drake, B;
730 Govindan, R;   731 Heath, S;   732 Ley, T;
733 Van Tine, B;   734 Westervelt, P;   735 Rubin, MA;
736 Lee, JI;   737 Aredes, ND;   738 Mariamidze, A;