Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines

AuthID
P-014-M8D
740
Author(s)
Ellrott, K
·
Bailey, MH
·
Saksena, G
·
Covington, KR
·
Kandoth, C
·
Stewart, C
·
Hess, J
·
Ma, S
·
Chiotti, KE
·
McLellan, M
·
[+245]·
[+475]·
Govindan, R
·
Heath, S
·
Ley, T
·
Van Tine, B
·
Westervelt, P
·
Rubin, MA
·
Lee, JI
·
Aredes, ND
·
Mariamidze, A
Document Type
Article
Year published
2018
Published
in Cell Systems, ISSN: 2405-4712
Volume: 6, Issue: 3, Pages: 271-281.e7
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ISSN: 2405-4712
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Name Order Name   Name Order Name   Name Order Name
1 Ellrott, K;   2 Bailey, MH;   3 Saksena, G;
4 Covington, KR;   5 Kandoth, C;   6 Stewart, C;
7 Hess, J;   8 Ma, S;   9 Chiotti, KE;
10 McLellan, M;   11 Sofia, HJ;   12 Hutter, C;
13 Getz, G;   14 Wheeler, D;   15 Ding, L;
16 Caesar-Johnson, SJ;   17 Demchok, JA;   18 Felau, I;
19 Kasapi, M;   20 Ferguson, ML;   21 Hutter, CM;
22 Sofia, HJ;   23 Tarnuzzer, R;   24 Wang, Z;
25 Yang, L;   26 Zenklusen, JC;   27 Zhang, J(;
28 Chudamani, S;   29 Liu, J;   30 Lolla, L;
31 Naresh, R;   32 Pihl, T;   33 Sun, Q;
34 Wan, Y;   35 Wu, Y;   36 Cho, J;
37 DeFreitas, T;   38 Frazer, S;   39 Gehlenborg, N;
40 Getz, G;   41 Heiman, DI;   42 Kim, J;
43 Lawrence, MS;   44 Lin, P;   45 Meier, S;
46 Noble, MS;   47 Saksena, G;   48 Voet, D;
49 Zhang, H;   50 Bernard, B;   51 Chambwe, N;
52 Dhankani, V;   53 Knijnenburg, T;   54 Kramer, R;
55 Leinonen, K;   56 Liu, Y;   57 Miller, M;
58 Reynolds, S;   59 Shmulevich, I;   60 Thorsson, V;
61 Zhang, W;   62 Akbani, R;   63 Broom, BM;
64 Hegde, AM;   65 Ju, Z;   66 Kanchi, RS;
67 Korkut, A;   68 Li, J;   69 Liang, H;
70 Ling, S;   71 Liu, W;   72 Lu, Y;
73 Mills, GB;   74 Ng, K;   75 Rao, A;
76 Ryan, M;   77 Wang, J;   78 Weinstein, JN;
79 Zhang, J;   80 Abeshouse, A;   81 Armenia, J;
82 Chakravarty, D;   83 Chatila, WK;   84 de Bruijn, I;
85 Gao, J;   86 Gross, BE;   87 Heins, ZJ;
88 Kundra, R;   89 La, K;   90 Ladanyi, M;
91 Luna, A;   92 Nissan, MG;   93 Ochoa, A;
94 Phillips, SM;   95 Reznik, E;   96 Sanchez-Vega, F;
97 Sander, C;   98 Schultz, N;   99 Sheridan, R;
100 Sumer, SO;   101 Sun, Y;   102 Taylor, BS;
103 Wang, J;   104 Zhang, H;   105 Anur, P;
106 Peto, M;   107 Spellman, P;   108 Benz, C;
109 Stuart, JM;   110 Wong, CK;   111 Yau, C;
112 Hayes, DN;   113 Parker;   114 Wilkerson, MD;
115 Ally, A;   116 Balasundaram, M;   117 Bowlby, R;
118 Brooks, D;   119 Carlsen, R;   120 Chuah, E;
121 Dhalla, N;   122 Holt, R;   123 Jones, SJ;
124 Kasaian, K;   125 Lee, D;   126 Ma, Y;
127 Marra, MA;   128 Mayo, M;   129 Moore, RA;
130 Mungall, AJ;   131 Mungall, K;   132 Robertson, AG;
133 Sadeghi, S;   134 Schein, JE;   135 Sipahimalani, P;
136 Tam, A;   137 Thiessen, N;   138 Tse, K;
139 Wong, T;   140 Berger, AC;   141 Beroukhim, R;
142 Cherniack, AD;   143 Cibulskis, C;   144 Gabriel, SB;
145 Gao, GF;   146 Ha, G;   147 Meyerson, M;
148 Schumacher, SE;   149 Shih, J;   150 Kucherlapati, MH;
151 Kucherlapati, RS;   152 Baylin, S;   153 Cope, L;
154 Danilova, L;   155 Bootwalla, MS;   156 Lai, PH;
157 Maglinte, DT;   158 Van Den Berg, DJ;   159 Weisenberger, DJ;
160 Auman, JT;   161 Balu, S;   162 Bodenheimer, T;
163 Fan, C;   164 Hoadley, KA;   165 Hoyle, AP;
166 Jefferys, SR;   167 Jones, CD;   168 Meng, S;
169 Mieczkowski, PA;   170 Mose, LE;   171 Perou, AH;
172 Perou, CM;   173 Roach, J;   174 Shi, Y;
175 Simons, JV;   176 Skelly, T;   177 Soloway, MG;
178 Tan, D;   179 Veluvolu, U;   180 Fan, H;
181 Hinoue, T;   182 Laird, PW;   183 Shen, H;
184 Zhou, W;   185 Bellair, M;   186 Chang, K;
187 Covington, K;   188 Creighton, CJ;   189 Dinh, H;
190 Doddapaneni, H;   191 Donehower, LA;   192 Drummond, J;
193 Gibbs, RA;   194 Glenn, R;   195 Hale, W;
196 Han, Y;   197 Hu, J;   198 Korchina, V;
199 Lee, S;   200 Lewis, L;   201 Li, W;
202 Liu, X;   203 Morgan, M;   204 Morton, D;
205 Muzny, D;   206 Santibanez, J;   207 Sheth, M;
208 Shinbrot, E;   209 Wang, L;   210 Wang, M;
211 Wheeler, DA;   212 Xi, L;   213 Zhao, F;
214 Hess, J;   215 Appelbaum, EL;   216 Bailey, M;
217 Cordes, MG;   218 Ding, L;   219 Fronick, CC;
220 Fulton, LA;   221 Fulton, RS;   222 Kandoth, C;
223 Mardis, ER;   224 McLellan, MD;   225 Miller, CA;
226 Schmidt, HK;   227 Wilson, RK;   228 Crain, D;
229 Curley, E;   230 Gardner, J;   231 Lau, K;
232 Mallery, D;   233 Morris, S;   234 Paulauskis, J;
235 Penny, R;   236 Shelton, C;   237 Shelton, T;
238 Sherman, M;   239 Thompson, E;   240 Yena, P;
241 Bowen, J;   242 Gastier-Foster, JM;   243 Gerken, M;
244 Leraas, KM;   245 Lichtenberg, TM;   246 Ramirez, NC;
247 Wise, L;   248 Zmuda, E;   249 Corcoran, N;
250 Costello, T;   251 Hovens, C;   252 Carvalho, AL;
253 de Carvalho, AC;   254 Fregnani, JH;   255 Longatto-Filho, A;
256 Reis, RM;   257 Scapulatempo-Neto, C;   258 Silveira, HC;
259 Vidal, DO;   260 Burnette, A;   261 Eschbacher, J;
262 Hermes, B;   263 Noss, A;   264 Singh, R;
265 Anderson, ML;   266 Castro, PD;   267 Ittmann, M;
268 Huntsman, D;   269 Kohl, B;   270 Le, X;
271 Thorp, R;   272 Andry, C;   273 Duffy, ER;
274 Lyadov, V;   275 Paklina, O;   276 Setdikova, G;
277 Shabunin, A;   278 Tavobilov, M;   279 McPherson, C;
280 Warnick, R;   281 Berkowitz, R;   282 Cramer, D;
283 Feltmate, C;   284 Horowitz, N;   285 Kibel, A;
286 Muto, M;   287 Raut, CP;   288 Malykh, A;
289 Barnholtz-Sloan, JS;   290 Barrett, W;   291 Devine, K;
292 Fulop, J;   293 Ostrom, QT;   294 Shimmel, K;
295 Wolinsky, Y;   296 Sloan, AE;   297 De Rose, A;
298 Giuliante, F;   299 Goodman, M;   300 Karlan, BY;
301 Hagedorn, CH;   302 Eckman, J;   303 Harr, J;
304 Myers, J;   305 Tucker, K;   306 Zach, LA;
307 Deyarmin, B;   308 Hu, H;   309 Kvecher, L;
310 Larson, C;   311 Mural, RJ;   312 Somiari, S;
313 Vicha, A;   314 Zelinka, T;   315 Bennett, J;
316 Iacocca, M;   317 Rabeno, B;   318 Swanson, P;
319 Latour, M;   320 Lacombe, L;   321 Têtu, B;
322 Bergeron, A;   323 McGraw, M;   324 Staugaitis, SM;
325 Chabot, J;   326 Hibshoosh, H;   327 Sepulveda, A;
328 Su, T;   329 Wang, T;   330 Potapova, O;
331 Voronina, O;   332 Desjardins, L;   333 Mariani, O;
334 Roman-Roman, S;   335 Sastre, X;   336 Stern, M;
337 Cheng, F;   338 Signoretti, S;   339 Berchuck, A;
340 Bigner, D;   341 Lipp, E;   342 Marks, J;
343 McCall, S;   344 McLendon, R;   345 Secord, A;
346 Sharp, A;   347 Behera, M;   348 Brat, DJ;
349 Chen, A;   350 Delman, K;   351 Force, S;
352 Khuri, F;   353 Magliocca, K;   354 Maithel, S;
355 Olson, JJ;   356 Owonikoko, T;   357 Pickens, A;
358 Ramalingam, S;   359 Shin, DM;   360 Sica, G;
361 Van Meir, EG;   362 Zhang, H;   363 Eijckenboom, W;
364 Gillis, A;   365 Korpershoek, E;   366 Looijenga, L;
367 Oosterhuis, W;   368 Stoop, H;   369 van Kessel, KE;
370 Zwarthoff, EC;   371 Calatozzolo, C;   372 Cuppini, L;
373 Cuzzubbo, S;   374 DiMeco, F;   375 Finocchiaro, G;
376 Mattei, L;   377 Perin, A;   378 Pollo, B;
379 Chen, C;   380 Houck, J;   381 Lohavanichbutr, P;
382 Hartmann, A;   383 Stoehr, C;   384 Stoehr, R;
385 Taubert, H;   386 Wach, S;   387 Wullich, B;
388 Kycler, W;   389 Murawa, D;   390 Wiznerowicz, M;
391 Chung, K;   392 Edenfield, WJ;   393 Martin, J;
394 Baudin, E;   395 Bubley, G;   396 Bueno, R;
397 De Rienzo, A;   398 Richards, WG;   399 Kalkanis, S;
400 Mikkelsen, T;   401 Noushmehr, H;   402 Scarpace, L;
403 Girard, N;   404 Aymerich, M;   405 Campo, E;
406 Giné, E;   407 Guillermo, AL;   408 Van Bang, N;
409 Hanh, PT;   410 Phu, BD;   411 Tang, Y;
412 Colman, H;   413 Evason, K;   414 Dottino, PR;
415 Martignetti, JA;   416 Gabra, H;   417 Juhl, H;
418 Akeredolu, T;   419 Stepa, S;   420 Hoon, D;
421 Ahn, K;   422 Kang, KJ;   423 Beuschlein, F;
424 Breggia, A;   425 Birrer, M;   426 Bell, D;
427 Borad, M;   428 Bryce, AH;   429 Castle, E;
430 Chandan, V;   431 Cheville, J;   432 Copland, JA;
433 Farnell, M;   434 Flotte, T;   435 Giama, N;
436 Ho, T;   437 Kendrick, M;   438 Kocher, J;
439 Kopp, K;   440 Moser, C;   441 Nagorney, D;
442 O’Brien, D;   443 O’Neill, BP;   444 Patel, T;
445 Petersen, G;   446 Que, F;   447 Rivera, M;
448 Roberts, L;   449 Smallridge, R;   450 Smyrk, T;
451 Stanton, M;   452 Thompson, RH;   453 Torbenson, M;
454 Yang, JD;   455 Zhang, L;   456 Brimo, F;
457 Ajani, JA;   458 Angulo Gonzalez, AM;   459 Behrens, C;
460 Bondaruk, J;   461 Broaddus, R;   462 Czerniak, B;
463 Esmaeli, B;   464 Fujimoto, J;   465 Gershenwald, J;
466 Guo, C;   467 Lazar, AJ;   468 Logothetis, C;
469 Meric-Bernstam, F;   470 Moran, C;   471 Ramondetta, L;
472 Rice, D;   473 Sood, A;   474 Tamboli, P;
475 Thompson, T;   476 Troncoso, P;   477 Tsao, A;
478 Wistuba, I;   479 Carter, C;   480 Haydu, L;
481 Hersey, P;   482 Jakrot, V;   483 Kakavand, H;
484 Kefford, R;   485 Lee, K;   486 Long, G;
487 Mann, G;   488 Quinn, M;   489 Saw, R;
490 Scolyer, R;   491 Shannon, K;   492 Spillane, A;
493 Stretch, J;   494 Synott, M;   495 Thompson, J;
496 Wilmott, J;   497 Al-Ahmadie, H;   498 Chan, TA;
499 Ghossein, R;   500 Gopalan, A;   501 Levine, DA;
502 Reuter, V;   503 Singer, S;   504 Singh, B;
505 Tien, NV;   506 Broudy, T;   507 Mirsaidi, C;
508 Nair, P;   509 Drwiega, P;   510 Miller, J;
511 Smith, J;   512 Zaren, H;   513 Park, J;
514 Hung, NP;   515 Kebebew, E;   516 Linehan, WM;
517 Metwalli, AR;   518 Pacak, K;   519 Pinto, PA;
520 Schiffman, M;   521 Schmidt, LS;   522 Vocke, CD;
523 Wentzensen, N;   524 Worrell, R;   525 Yang, H;
526 Moncrieff, M;   527 Goparaju, C;   528 Melamed, J;
529 Pass, H;   530 Botnariuc, N;   531 Caraman, I;
532 Cernat, M;   533 Chemencedji, I;   534 Clipca, A;
535 Doruc, S;   536 Gorincioi, G;   537 Mura, S;
538 Pirtac, M;   539 Stancul, I;   540 Tcaciuc, D;
541 Albert, M;   542 Alexopoulou, I;   543 Arnaout, A;
544 Bartlett, J;   545 Engel, J;   546 Gilbert, S;
547 Parfitt, J;   548 Sekhon, H;   549 Thomas, G;
550 Rassl, DM;   551 Rintoul, RC;   552 Bifulco, C;
553 Tamakawa, R;   554 Urba, W;   555 Hayward, N;
556 Timmers, H;   557 Antenucci, A;   558 Facciolo, F;
559 Grazi, G;   560 Marino, M;   561 Merola, R;
562 de Krijger, R;   563 Gimenez-Roqueplo, A;   564 Piché, A;
565 Chevalier, S;   566 McKercher, G;   567 Birsoy, K;
568 Barnett, G;   569 Brewer, C;   570 Farver, C;
571 Naska, T;   572 Pennell, NA;   573 Raymond, D;
574 Schilero, C;   575 Smolenski, K;   576 Williams, F;
577 Morrison, C;   578 Borgia, JA;   579 Liptay, MJ;
580 Pool, M;   581 Seder, CW;   582 Junker, K;
583 Omberg, L;   584 Dinkin, M;   585 Manikhas, G;
586 Alvaro, D;   587 Bragazzi, MC;   588 Cardinale, V;
589 Carpino, G;   590 Gaudio, E;   591 Chesla, D;
592 Cottingham, S;   593 Dubina, M;   594 Moiseenko, F;
595 Dhanasekaran, R;   596 Becker, K;   597 Janssen, K;
598 Slotta-Huspenina, J;   599 Abdel-Rahman, MH;   600 Aziz, D;
601 Bell, S;   602 Cebulla, CM;   603 Davis, A;
604 Duell, R;   605 Elder, JB;   606 Hilty, J;
607 Kumar, B;   608 Lang, J;   609 Lehman, NL;
610 Mandt, R;   611 Nguyen, P;   612 Pilarski, R;
613 Rai, K;   614 Schoenfield, L;   615 Senecal, K;
616 Wakely, P;   617 Hansen, P;   618 Lechan, R;
619 Powers, J;   620 Tischler, A;   621 Grizzle, WE;
622 Sexton, KC;   623 Kastl, A;   624 Henderson, J;
625 Porten, S;   626 Waldmann, J;   627 Fassnacht, M;
628 Asa, SL;   629 Schadendorf, D;   630 Couce, M;
631 Graefen, M;   632 Huland, H;   633 Sauter, G;
634 Schlomm, T;   635 Simon, R;   636 Tennstedt, P;
637 Olabode, O;   638 Nelson, M;   639 Bathe, O;
640 Carroll, PR;   641 Chan, JM;   642 Disaia, P;
643 Glenn, P;   644 Kelley, RK;   645 Landen, CN;
646 Phillips, J;   647 Prados, M;   648 Simko, J;
649 Smith-McCune, K;   650 VandenBerg, S;   651 Roggin, K;
652 Fehrenbach, A;   653 Kendler, A;   654 Sifri, S;
655 Steele, R;   656 Jimeno, A;   657 Carey, F;
658 Forgie, I;   659 Mannelli, M;   660 Carney, M;
661 Hernandez, B;   662 Campos, B;   663 Herold-Mende, C;
664 Jungk, C;   665 Unterberg, A;   666 von Deimling, A;
667 Bossler, A;   668 Galbraith, J;   669 Jacobus, L;
670 Knudson, M;   671 Knutson, T;   672 Ma, D;
673 Milhem, M;   674 Sigmund, R;   675 Godwin, AK;
676 Madan, R;   677 Rosenthal, HG;   678 Adebamowo, C;
679 Adebamowo, SN;   680 Boussioutas, A;   681 Beer, D;
682 Giordano, T;   683 Mes-Masson, A;   684 Saad, F;
685 Bocklage, T;   686 Landrum, L;   687 Mannel, R;
688 Moore, K;   689 Moxley, K;   690 Postier, R;
691 Walker, J;   692 Zuna, R;   693 Feldman, M;
694 Valdivieso, F;   695 Dhir, R;   696 Luketich, J;
697 Mora Pinero, EM;   698 Quintero-Aguilo, M;   699 Carlotti, CG;
700 Dos Santos, JS;   701 Kemp, R;   702 Sankarankuty, A;
703 Tirapelli, D;   704 Catto, J;   705 Agnew, K;
706 Swisher, E;   707 Creaney, J;   708 Robinson, B;
709 Shelley, CS;   710 Godwin, EM;   711 Kendall, S;
712 Shipman, C;   713 Bradford, C;   714 Carey, T;
715 Haddad, A;   716 Moyer, J;   717 Peterson, L;
718 Prince, M;   719 Rozek, L;   720 Wolf, G;
721 Bowman, R;   722 Fong, KM;   723 Yang, I;
724 Korst, R;   725 Rathmell, WK;   726 Fantacone-Campbell, JL;
727 Hooke, JA;   728 Kovatich, AJ;   729 Shriver, CD;
730 DiPersio, J;   731 Drake, B;   732 Govindan, R;
733 Heath, S;   734 Ley, T;   735 Van Tine, B;
736 Westervelt, P;   737 Rubin, MA;   738 Lee, JI;
739 Aredes, ND;   740 Mariamidze, A;