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TITLE: A metatranscriptomics strategy for efficient characterization of the microbiome in human tissues with low microbial biomass
AUTHORS: Pereira Marques, Joana; Ferreira, Rui M.; Figueiredo, Ceu ;
PUBLISHED: 2024, SOURCE: GUT MICROBES, VOLUME: 16, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef Unpaywall
2
TITLE: A review of machine learning methods for cancer characterization from microbiome data
AUTHORS: Teixeira, Marco; Silva, Francisco ; Ferreira, Rui M.; Pereira, Tania ; Figueiredo, Ceu ; Oliveira, Helder P. ;
PUBLISHED: 2024, SOURCE: NPJ PRECISION ONCOLOGY, VOLUME: 8, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef Unpaywall
3
TITLE: E-cadherin variants associated with oral facial clefts trigger aberrant cell motility in a REG1A-dependent manner  Full Text
AUTHORS: Pereira, Joana; Melo, Soraia; Ferreira, Rui M.; Carneiro, Patricia; Yang, Vitor; Maia, Andre F.; Carvalho, Joao; Figueiredo, Ceu ; Machado, Jose Carlos ; Morais de Sa, Eurico; Seruca, Raquel; Figueiredo, Joana;
PUBLISHED: 2024, SOURCE: CELL COMMUNICATION AND SIGNALING, VOLUME: 22, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef Unpaywall
5
TITLE: Gastric Cancer: The Microbiome Beyond Helicobacter pylori
AUTHORS: Melissa Mendes Rocha; Joana Pereira Marques; Rui Ferreira; Ceu Figueiredo ;
PUBLISHED: 2023, SOURCE: Current topics in microbiology and immunology, VOLUME: 444
INDEXED IN: Scopus CrossRef: 2 Unpaywall
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TITLE: H elicobacter pylori infection induces abnormal expression of pro-angiogenic gene ANGPT2 and miR-203a in AGS gastric cell line  Full Text
AUTHORS: Malespín Bendaña, W; Ferreira, RM; Pinto, MT; Figueiredo, C ; Alpízar Alpízar, W; Une, C; Figueroa Protti, L; Ramírez, V;
PUBLISHED: 2023, SOURCE: Brazilian Journal of Microbiology, VOLUME: 54, ISSUE: 2
INDEXED IN: Scopus CrossRef Unpaywall
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TITLE: Harnessing the Microbiome to Reduce Pancreatic Cancer Burden  Full Text
AUTHORS: Bastos, Ana Raquel; Pereira Marques, Joana; Ferreira, Rui Manuel; Figueiredo, Ceu ;
PUBLISHED: 2023, SOURCE: CANCERS, VOLUME: 15, ISSUE: 9
INDEXED IN: Scopus WOS
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TITLE: Helicobacter pylori infection induces abnormal expression of pro-angiogenic gene ANGPT2 and miR-203a in AGS gastric cell line  Full Text
AUTHORS: Malespin Bendana, Wendy; Ferreira, Rui M.; Pinto, Marta T.; Figueiredo, Ceu ; Alpizar Alpizar, Warner; Une, Clas; Figueroa Protti, Lucia; Ramirez, Vanessa;
PUBLISHED: 2023, SOURCE: BRAZILIAN JOURNAL OF MICROBIOLOGY
INDEXED IN: WOS
10
TITLE: The Helicobacter pylori Genome Project: insights into H. pylori population structure from analysis of a worldwide collection of complete genomes
AUTHORS: Kaisa Thorell; Zilia Y. Muñoz Ramírez; Difei Wang; Santiago Sandoval Motta; Rajiv Boscolo Agostini; Silvia Ghirotto; Roberto C. Torres; Judith Romero Gallo; Uma Krishna; Richard M. Peek; M. Blanca Piazuelo; Naïma Raaf; Federico Bentolila; Hafeza Aftab; Junko Akada; Takashi Matsumoto; Freddy Haesebrouck; Rony P. Colanzi; Thais F. Bartelli; Diana Noronha Nunes; Adriane Pelosof; Claudia Zitron Sztokfisz; Emmanuel Dias Neto; Paulo Pimentel Assumpção; Ivan Tishkov; Laure Brigitte Kouitcheu Mabeku; Karen J. Goodman; Janis Geary; Taylor J. Cromarty; Nancy L. Price; Douglas Quilty; Alejandro H. Corvalan; Carolina A. Serrano; Robinson Gonzalez; Arnoldo Riquelme; Apolinaria García Cancino; Cristian Parra Sepúlveda; Giuliano Bernal; Francisco Castillo; Alisa M. Goldstein; Nan Hu; Philip R. Taylor; Maria Mercedes Bravo; Alvaro Pazos; Luis E. Bravo; Keith T. Wilson; James G. Fox; Vanessa Ramírez Mayorga; Silvia Molina Castro; Sundry Durán Bermúdez; Christian Campos Núñez; Manuel Chaves Cervantes; Evariste Tshibangu Kabamba; Ghislain Disashi Tumba; Antoine Tshimpi Wola; Patrick de Jesus Ngoma Kisoko; Dieudonné Mumba Ngoyi; Modesto Cruz; Celso Hosking; José Jiménez Abreu; Christine Varon; Lucie Benejat; Ousman Secka; Alexander Link; Peter Malfertheiner; Michael Buenor Adinortey; Ansumana Sandy Bockarie; Cynthia Ayefoumi Adinortey; Eric Gyamerah Ofori; Dionyssios N. Sgouras; Beatriz Martinez Gonzalez; Spyridon Michopoulos; Sotirios Georgopoulos; Elisa Hernandez; Braulio Volga Tacatic; Mynor Aguilar; Ricardo L. Dominguez; Douglas R. Morgan; Hjördís Harðardóttir; Anna Ingibjörg Gunnarsdóttir; Hallgrímur Guðjónsson; Jón Gunnlaugur Jónasson; Einar S. Björnsson; Mamatha Ballal; Vignesh Shetty; Muhammad Miftahussurur; Titong Sugihartono; Ricky Indra Alfaray; Langgeng Agung Waskito; Kartika Afrida Fauzia; Ari Fahrial Syam; Hasan Maulahela; Reza Malekzadeh; Masoud Sotoudeh; Avi Peretz; Maya Azrad; Avi On; Valli De Re; Stefania Zanussi; Renato Cannizzaro; Vincenzo Canzonieri; Takaya Shimura; Kengo Tokunaga; Takako Osaki; Shigeru Kamiya; Khaled Jadallah; Ismail Matalka; Nurbek Igissinov; Mariia Satarovna Moldobaeva; Attokurova Rakhat; Il Ju Choi; Jae Gyu Kim; Nayoung Kim; Minkyo Song; Mārcis Leja; Reinis Vangravs; Ģirts Šķenders; Dace Rudzīte; Aiga Rūdule; Aigars Vanags; Ilze Kikuste; Juozas Kupcinskas; Jurgita Skieceviciene; Laimas Jonaitis; Gediminas Kiudelis; Paulius Jonaitis; Vytautas Kiudelis; Greta Varkalaite; Jamuna Vadivelu; Mun Fai Loke; Kumutha Malar Vellasamy; Roberto Herrera Goepfert; Juan Octavio Alonso Larraga; Than Than Yee; Kyaw Htet; Takeshi Matsuhisa; Pradeep Krishna Shrestha; Shamshul Ansari; Olumide Abiodun; Christopher Jemilohun; Kolawole Oluseyi Akande; Oluwatosin Olu Abiodun; Francis Ajang Magaji; Ayodele Omotoso; Chukwuemeka Chukwunwendu Osuagwu; Uchenna Okonkwo; Opeyemi O. Owoseni; Carlos Castaneda; Miluska Castillo; Billie Velapatino; Robert H. Gilman; Paweł Krzyżek; Grażyna Gościniak; Dorota Pawełka; Izabela Korona Glowniak; Halina Cichoz Lach; Monica Oleastro; Ceu Figueiredo ; Jose C. Machado ; Rui M. Ferreira; Dmitry S. Bordin; Maria A. Livzan; Vladislav V. Tsukanov; Patrick Tan; Khay Guan Yeoh; Feng Zhu; Reid Ally; Rainer Haas; Milagrosa Montes; María Fernández Reyes; Esther Tamayo; Jacobo Lizasoain; Luis Bujanda; Sergio Lario; María José Ramírez Lázaro; Xavier Calvet; Eduard Brunet Mas; María José Domper Arnal; Sandra García Mateo; Daniel Abad Baroja; Pedro Delgado Guillena; Leticia Moreira; Josep Botargues; Isabel Pérez Martínez; Eva Barreiro Alonso; Virginia Flores; Javier P. Gisbert; Edurne Amorena Muro; Pedro Linares; Vicente Martin; Laura Alcoba; Tania Fleitas Kanonnikoff; Hisham N. Altayeb; Lars Engstrand; Helena Enroth; Peter M. Keller; Karoline Wagner; Daniel Pohl; Yi-Chia Lee; Jyh-Ming Liou; Ming-Shiang Wu; Bekir Kocazeybek; Suat Sarıbas; İhsan Tasçı; Süleyman Demiryas; Nuray Kepil; Luis Quiel; Miguel Villagra; Morgan Norton; Deborah Johnson; Robert J. Huang; Joo Ha Hwang; Wendy Szymczak; Saranathan Rajagopalan; Emmanuel Asare; William R. Jacobs; Haejin In; Roni Bollag; Aileen Lopez; Edward J. Kruse; Joseph White; David Y. Graham; Charlotte Lane; Yang Gao; Patricia I. Fields; Benjamin D. Gold; Marcia Cruz Correa; María González Pons; Luz M. Rodriguez; Vo Phuoc Tuan; Ho Dang Quy Dung; Tran Thanh Binh; Tran Thi Huyen Trang; Vu Van Khien; Xiongfong Chen; Castle Raley; Bailey Kessing; Yongmei Zhao; Bao Tran; Andrés J. Gutiérrez Escobar; Yunhu Wan; Belynda Hicks; Bin Zhu; Kai Yu; Bin Zhu; Meredith Yeager; Amy Hutchinson; Kedest Teshome; Kristie Jones; Wen Luo; Quentin Jehanne; Yukako Katsura; Patricio Gonzalez Hormazabal; Xavier Didelot; Sam Sheppard; Eduardo Tarazona Santos; Leonardo Mariño Ramírez; John T. Loh; Steffen Backert; Michael Naumann; Christian C. Abnet; Annemieke Smet; Douglas E. Berg; Álvaro Chiner Oms; Iñaki Comas; Francisco José Martínez Martínez; Roxana Zamudio; Philippe Lehours; Francis Megraud; Koji Yahara; Martin J. Blaser; Tamas Vincze; Richard D. Morgan; Richard J. Roberts; Stephen J. Chanock; John P. Dekker; Javier Torres; Timothy L. Cover; Mehwish Noureen; Wolfgang Fischer; Filipa F. Vale; Joshua L. Cherry; Naoki Osada; Masaki Fukuyo; Masanori Arita; Yoshio Yamaoka; Ichizo Kobayashi; Ikuo Uchiyama; Daniel Falush; M. Constanza Camargo; Charles S. Rabkin; ...More
PUBLISHED: 2023, SOURCE: Nature Communications, VOLUME: 14, ISSUE: 1
INDEXED IN: Scopus CrossRef Unpaywall
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