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TITLE: TNA4OptFlux - A software tool for the analysis of strain optimization strategies  Full Text
AUTHORS: Pinto, JP ; Pereira, R; Cardoso, J; Rocha, I ; Rocha, M ;
PUBLISHED: 2013, SOURCE: BMC Research Notes, VOLUME: 6, ISSUE: 1
INDEXED IN: Scopus CrossRef: 1
IN MY: ORCID
2
TITLE: A study of the short and long-term regulation of E. coli metabolic pathways.
AUTHORS: Lourenco, A; Carneiro, S; Pinto, JP ; Rocha, M ; Ferreira, EC ; Rocha, I ;
PUBLISHED: 2011, SOURCE: Journal of integrative bioinformatics, VOLUME: 8, ISSUE: 3
INDEXED IN: Scopus
IN MY: ORCID
3
TITLE: Highlighting Metabolic Strategies Using Network Analysis over Strain Optimization Results  Full Text
AUTHORS: Jose Pedro Pinto ; Isabel Rocha ; Miguel Rocha ;
PUBLISHED: 2011, SOURCE: 6th IAPR International Conference on Pattern Recognition in Bioinformatics in PATTERN RECOGNITION IN BIOINFORMATICS, VOLUME: 7036
INDEXED IN: Scopus WOS CrossRef
IN MY: ORCID
4
TITLE: Interpreting the regulatory interplay in E. Coli metabolic pathways
AUTHORS: Lourenco, A; Carneiro, S ; Pinto, JP ; Rocha, M ; Ferreira, EC ; Rocha, I ;
PUBLISHED: 2011, SOURCE: Advances in Intelligent and Soft Computing, VOLUME: 93
INDEXED IN: Scopus CrossRef
IN MY: ORCID
5
TITLE: A software tool for network topology analysis under a Metabolic Engineering perspective
AUTHORS: Pinto, JP ; Rocha, I ; Rocha, M ;
PUBLISHED: 2010, SOURCE: 2010 ACM International Conference on Bioinformatics and Computational Biology, ACM-BCB 2010 in 2010 ACM International Conference on Bioinformatics and Computational Biology, ACM-BCB 2010
INDEXED IN: Scopus CrossRef
IN MY: ORCID
6
TITLE: OptFlux: an open-source software platform for in silico metabolic engineering  Full Text
AUTHORS: Isabel Rocha ; Paulo Maia; Pedro Evangelista; Paulo Vilaca; Simao Soares; Jose P Pinto ; Jens Nielsen; Kiran R Patil; Eugenio C Ferreira ; Miguel Rocha ;
PUBLISHED: 2010, SOURCE: BMC SYSTEMS BIOLOGY, VOLUME: 4, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef: 278
IN MY: ORCID
7
TITLE: Data Integration Issues in the Reconstruction of the Genome-Scale Metabolic Model of Zymomonas Mobillis
AUTHORS: Jose P Pinto ; Oscar Dias ; Analia Lourenco; Sonia Carneiro ; Eugenio C Ferreira ; Isabel Rocha ; Miguel Rocha ;
PUBLISHED: 2009, SOURCE: 2nd International Workshop on Practical Applications of Computational Biology and Bioinformatics (IWPACBB 08) in 2ND INTERNATIONAL WORKSHOP ON PRACTICAL APPLICATIONS OF COMPUTATIONAL BIOLOGY AND BIOINFORMATICS (IWPACBB 2008), VOLUME: 49
INDEXED IN: Scopus WOS CrossRef: 1
IN MY: ORCID
8
TITLE: Differential evolution for the offline and online optimization of fed-batch fermentation processes
AUTHORS: Mendes, R; Rocha, I ; Pinto, JP ; Ferreira, EC ; Rocha, M ;
PUBLISHED: 2008, SOURCE: Studies in Computational Intelligence, VOLUME: 143
INDEXED IN: Scopus CrossRef: 5
IN MY: ORCID
9
TITLE: Natural computation meta-heuristics for the in silico optimization of microbial strains  Full Text
AUTHORS: Miguel Rocha ; Paulo Maia; Rui Mendes; Jose P Pinto ; Eugenio C Ferreira ; Jens Nielsen; Kiran Raosaheb Patil; Isabel Rocha ;
PUBLISHED: 2008, SOURCE: BMC BIOINFORMATICS, VOLUME: 9, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef: 79
IN MY: ORCID
10
TITLE: Evaluating Evolutionary Algorithms and Differential Evolution for the online optimization of fermentation processes
AUTHORS: Rocha, M ; Pinto, JP ; Rocha, I ; Ferreira, EC ;
PUBLISHED: 2007, SOURCE: 5th European Conference on Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics (EvoBIO 2007) in Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics, Proceedings, VOLUME: 4447
INDEXED IN: Scopus WOS CrossRef: 5
IN MY: ORCID
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