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TITLE: Cooperative development of logical modelling standards and tools with CoLoMoTo  Full Text
AUTHORS: Naldi, A; Monteiro, PT ; Mussel, C; Kestler, HA; Thieffry, D; Xenarios, I; Saez Rodriguez, J; Helikar, T; Chaouiya, C;
PUBLISHED: 2015, SOURCE: BIOINFORMATICS, VOLUME: 31, ISSUE: 7
INDEXED IN: Scopus WOS CrossRef
IN MY: ORCID
3
TITLE: Cooperative development of logical modelling standards and tools with CoLoMoTo
AUTHORS: Naldi, A; Monteiro, PT ; Mussel, C; Kestler, HA; Thieffry, D; Xenarios, I; Saez Rodriguez, J; Helikar, T; Chaouiya, C; Albert, R; Barberis, M; Calzone, L; Chasapi, A; Cokelaer, T; Crespo, I; Dorier, J; Drager, A; Hernandez, C; Hucka, M; De Jong, H; Keating, SM; Klamt, S; Klarner, H; Laubenbacher, R; Le Novere, N; Niknejad, A; Rodriguez, N; Siebert, H; Stoll, G; Zanudo., JGT; ...More
PUBLISHED: 2014, SOURCE: Bioinformatics, VOLUME: 31, ISSUE: 7
INDEXED IN: Scopus
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TITLE: Dynamical modeling and analysis of large cellular regulatory networks  Full Text
AUTHORS: Berenguier, D; Chaouiya, C ; Monteiro, PT ; Naldi, A; Remy, E; Thieffry, D; Tichit, L;
PUBLISHED: 2013, SOURCE: CHAOS, VOLUME: 23, ISSUE: 2
INDEXED IN: Scopus WOS
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TITLE: SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools  Full Text
AUTHORS: Claudine Chaouiya ; Duncan Berenguier; Sarah M Keating; Aurelien Naldi; Martijn P van Iersel; Nicolas Rodriguez; Andreas Draeger; Finja Buechel; Thomas Cokelaer; Bryan Kowal; Benjamin Wicks; Gonçalves, Emanuel ; Julien Dorier; Michel Page; Pedro T Monteiro ; Axel von Kamp; Ioannis Xenarios; Hidde de Jong; Michael Hucka; Steffen Klamt; Denis Thieffry; Nicolas Le Novere; Julio Saez Rodriguez; Tomas Helikar; ...More
PUBLISHED: 2013, SOURCE: BMC SYSTEMS BIOLOGY, VOLUME: 7, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef: 83
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TITLE: Efficient handling of large signalling-regulatory networks by focusing on their core control
AUTHORS: Naldi, A; Monteiro, PT ; Chaouiya, C ;
PUBLISHED: 2012, SOURCE: 10th International Conference on Computational Methods in Systems Biology, CMSB 2012 in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), VOLUME: 7605 LNBI
INDEXED IN: Scopus CrossRef
IN MY: ORCID
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TITLE: Efficient Verification for Logical Models of Regulatory Networks
AUTHORS: Pedro T Monteiro ; Claudine Chaouiya ;
PUBLISHED: 2012, SOURCE: 6th International Conference on Practical Applications of Computational Biology and Bioinformatics (PACBB) in 6TH INTERNATIONAL CONFERENCE ON PRACTICAL APPLICATIONS OF COMPUTATIONAL BIOLOGY & BIOINFORMATICS, VOLUME: 154
INDEXED IN: Scopus WOS CrossRef
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TITLE: Genetic network analyzer: A tool for the qualitative modeling and simulation of bacterial regulatory networks
AUTHORS: Batt, G; Besson, B; Ciron, PE; De Jong, H; Dumas, E; Geiselmann, J; Monte, R; Monteiro, PT ; Page, M; Rechenmann, F; Ropers, D;
PUBLISHED: 2012, SOURCE: Methods in Molecular Biology, VOLUME: 804
INDEXED IN: Scopus CrossRef
IN MY: ORCID
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