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Pedro Tiago Gonçalves Monteiro
AuthID:
R-000-KB5
Publications
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Article (17)
Proceedings Paper (6)
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Confirmed Publications: 23
1
TITLE:
Cooperative development of logical modelling standards and tools with CoLoMoTo
Full Text
AUTHORS:
Naldi, A;
Monteiro, PT
; Mussel, C; Kestler, HA; Thieffry, D; Xenarios, I; Saez Rodriguez, J; Helikar, T;
Chaouiya, C
;
PUBLISHED:
2015
,
SOURCE:
BIOINFORMATICS,
VOLUME:
31,
ISSUE:
7
INDEXED IN:
Scopus
WOS
CrossRef
IN MY:
ORCID
2
TITLE:
Not Seeing the Forest for the Trees: Size of the Minimum Spanning Trees (MSTs) Forest and Branch Significance in MST-Based Phylogenetic Analysis
Full Text
AUTHORS:
Andreia Sofia Teixeira
;
Pedro T Monteiro
;
Joao A Carrico
;
Mario Ramirez
;
Alexandre P Francisco
;
PUBLISHED:
2015
,
SOURCE:
PLOS ONE,
VOLUME:
10,
ISSUE:
3
INDEXED IN:
Scopus
WOS
CrossRef
:
13
IN MY:
ORCID
3
TITLE:
Cooperative development of logical modelling standards and tools with CoLoMoTo
AUTHORS:
Naldi, A;
Monteiro, PT
;
Mussel, C
; Kestler, HA; Thieffry, D; Xenarios, I; Saez Rodriguez, J; Helikar, T;
Chaouiya, C
; Albert, R; Barberis, M; Calzone, L; Chasapi, A; Cokelaer, T; Crespo, I; Dorier, J; Drager, A; Hernandez, C; Hucka, M; De Jong, H;
Keating, SM;
Klamt, S;
Klarner, H;
Laubenbacher, R;
Le Novere, N;
Niknejad, A;
Rodriguez, N;
Siebert, H;
Stoll, G;
Zanudo., JGT;
...More
PUBLISHED:
2014
,
SOURCE:
Bioinformatics,
VOLUME:
31,
ISSUE:
7
INDEXED IN:
Scopus
4
TITLE:
The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae
Full Text
AUTHORS:
Miguel Cacho Teixeira
;
Pedro Tiago Monteiro
;
Joana Fernandes Guerreiro
;
Joana Pinho Goncalves
;
Nuno Pereira Mira
;
Sandra Costa dos Santos
;
Tania Rodrigues Cabrito
;
Margarida Palma
;
Catarina Costa
;
Alexandre Paulo Francisco
;
Sara Cordeiro Madeira
;
Arlindo Limede Oliveira
;
Ana Teresa Freitas
;
Isabel Sa Correia
;
PUBLISHED:
2014
,
SOURCE:
NUCLEIC ACIDS RESEARCH,
VOLUME:
42,
ISSUE:
D1
INDEXED IN:
Scopus
WOS
DBLP
CrossRef
:
185
IN MY:
ORCID
|
ResearcherID
5
TITLE:
Dynamical modeling and analysis of large cellular regulatory networks
Full Text
AUTHORS:
Berenguier, D;
Chaouiya, C
;
Monteiro, PT
; Naldi, A; Remy, E; Thieffry, D;
Tichit, L
;
PUBLISHED:
2013
,
SOURCE:
CHAOS,
VOLUME:
23,
ISSUE:
2
INDEXED IN:
Scopus
WOS
IN MY:
ResearcherID
6
TITLE:
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools
Full Text
AUTHORS:
Claudine Chaouiya
;
Duncan Berenguier
; Sarah M Keating; Aurelien Naldi; Martijn P van Iersel; Nicolas Rodriguez; Andreas Draeger; Finja Buechel; Thomas Cokelaer; Bryan Kowal; Benjamin Wicks;
Gonçalves, Emanuel
; Julien Dorier;
Michel Page
;
Pedro T Monteiro
; Axel von Kamp;
Ioannis Xenarios
; Hidde de Jong; Michael Hucka; Steffen Klamt;
Denis Thieffry;
Nicolas Le Novere;
Julio Saez Rodriguez;
Tomas Helikar
;
...More
PUBLISHED:
2013
,
SOURCE:
BMC SYSTEMS BIOLOGY,
VOLUME:
7,
ISSUE:
1
INDEXED IN:
Scopus
WOS
CrossRef
:
83
IN MY:
ORCID
|
ResearcherID
7
TITLE:
Efficient handling of large signalling-regulatory networks by focusing on their core control
AUTHORS:
Naldi, A;
Monteiro, PT
;
Chaouiya, C
;
PUBLISHED:
2012
,
SOURCE:
10th International Conference on Computational Methods in Systems Biology, CMSB 2012
in
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics),
VOLUME:
7605 LNBI
INDEXED IN:
Scopus
CrossRef
IN MY:
ORCID
8
TITLE:
Efficient Verification for Logical Models of Regulatory Networks
AUTHORS:
Pedro T Monteiro
;
Claudine Chaouiya
;
PUBLISHED:
2012
,
SOURCE:
6th International Conference on Practical Applications of Computational Biology and Bioinformatics (PACBB)
in
6TH INTERNATIONAL CONFERENCE ON PRACTICAL APPLICATIONS OF COMPUTATIONAL BIOLOGY & BIOINFORMATICS,
VOLUME:
154
INDEXED IN:
Scopus
WOS
CrossRef
IN MY:
ORCID
|
ResearcherID
9
TITLE:
Genetic network analyzer: A tool for the qualitative modeling and simulation of bacterial regulatory networks
AUTHORS:
Batt, G; Besson, B; Ciron, PE; De Jong, H; Dumas, E; Geiselmann, J; Monte, R;
Monteiro, PT
; Page, M; Rechenmann, F; Ropers, D;
PUBLISHED:
2012
,
SOURCE:
Methods in Molecular Biology,
VOLUME:
804
INDEXED IN:
Scopus
CrossRef
IN MY:
ORCID
10
TITLE:
PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods
Full Text
AUTHORS:
Alexandre P Francisco
;
Catia Vaz
;
Pedro T Monteiro
;
Jose Melo Cristino
;
Mario Ramirez
;
Joao A Carrico
;
PUBLISHED:
2012
,
SOURCE:
BMC BIOINFORMATICS,
VOLUME:
13,
ISSUE:
1
INDEXED IN:
Scopus
WOS
DBLP
CrossRef
:
399
IN MY:
ORCID
|
ResearcherID
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