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TITLE: The pegi3s Bioinformatics Docker Images Project
AUTHORS: Lopez Fernandez, Hugo; Ferreira, Pedro ; Reboiro Jato, Miguel; Vieira, Cristina P. ; Vieira, Jorge ;
PUBLISHED: 2022, SOURCE: 15th International Conference on Practical Applications of Computational Biology and Bioinformatics (PACBB) in PRACTICAL APPLICATIONS OF COMPUTATIONAL BIOLOGY & BIOINFORMATICS, PACBB 2021, VOLUME: 325
INDEXED IN: Scopus WOS CrossRef
12
TITLE: On the Identification of Clinically Relevant Bacterial Amino Acid Changes at the Whole Genome Level Using Auto-PSS-Genome  Full Text
AUTHORS: Lopez Fernandez, H; Vieira, CP ; Ferreira, P ; Gouveia, P; Fdez Riverola, F; Reboiro Jato, M; Vieira, J ;
PUBLISHED: 2021, SOURCE: INTERDISCIPLINARY SCIENCES-COMPUTATIONAL LIFE SCIENCES, VOLUME: 13, ISSUE: 2
INDEXED IN: Scopus WOS CrossRef
IN MY: ORCID
13
TITLE: The discovery, distribution, and diversity of DNA viruses associated with Drosophila melanogaster in Europe
AUTHORS: Wallace, MA; Coffman, KA; Gilbert, C; Ravindran, S; Albery, GF; Abbott, J; Argyridou, E; Bellosta, P; Betancourt, AJ; Colinet, H; Eric, K; Glaser Schmitt, A; Grath, S; Jelic, M; Kankare, M; Kozeretska, I; Loeschcke, V; Montchamp Moreau, C; Ometto, L; Onder, BS; Orengo, DJ; Parsch, J; Pascual, M; Patenkovic, A; Puerma, E; Ritchie, MG; Rota Stabelli, O; Schou, MF; Serga, SV; Stamenkovic Radak, M; Tanaskovic, M; Veselinovic, MS; Vieira, J ; Vieira, CP ; Kapun, M; Flatt, T; Gonzalez, J; Staubach, F; Obbard, DJ; ...More
PUBLISHED: 2021, SOURCE: VIRUS EVOLUTION, VOLUME: 7, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef: 31
14
TITLE: The identification of the Rosa S-locus and implications on the evolution of the Rosaceae gametophytic self-incompatibility systems  Full Text
AUTHORS: Vieira, J ; Pimenta, J; Gomes, A; Laia, J; Rocha, S; Heitzler, P; Vieira, CP ;
PUBLISHED: 2021, SOURCE: SCIENTIFIC REPORTS, VOLUME: 11, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef: 24
IN MY: ORCID
15
TITLE: Comparative Genomics Discloses the Uniqueness and the Biosynthetic Potential of the Marine CyanobacteriumHyella patelloides  Full Text
AUTHORS: Brito, A ; Vieira, J ; Vieira, CP ; Zhu, T; Leao, PN ; Ramos, V; Lu, XF; Vasconcelos, VM ; Gugger, M; Tamagnini, P ;
PUBLISHED: 2020, SOURCE: FRONTIERS IN MICROBIOLOGY, VOLUME: 11
INDEXED IN: Scopus WOS CrossRef: 5
IN MY: ORCID
16
TITLE: Genomic Analysis of European Drosophila melanogaster Populations Reveals Longitudinal Structure, Continent-Wide Selection, and Previously Unknown DNA Viruses
AUTHORS: Kapun, M; Barron, MG; Staubach, F; Obbard, DJ; Wiberg, RAW; Vieira, J ; Goubert, C; Rota Stabelli, O; Kankare, M; Bogaerts Marquez, M; Haudry, A; Waidele, L; Kozeretska, I; Pasyukova, EG; Loeschcke, V; Pascual, M; Vieira, CP ; Serga, S; Montchamp Moreau, C; Abbott, J; Gibert, P; Porcelli, D; Posnien, N; Sanchez Gracia, A; Grath, S; Sucena, E; Bergland, AO; Guerreiro, MPG; Onder, BS; Argyridou, E; Guio, L; Schou, MF; Deplancke, B; Vieira, C; Ritchie, MG; Zwaan, BJ; Tauber, E; Orengo, DJ; Puerma, E; Aguade, M; Schmidt, P; Parsch, J; Betancourt, AJ; Flatt, T; Gonzalez, J; ...More
PUBLISHED: 2020, SOURCE: MOLECULAR BIOLOGY AND EVOLUTION, VOLUME: 37, ISSUE: 9
INDEXED IN: Scopus WOS CrossRef: 107
IN MY: ORCID
17
TITLE: Inferring Positive Selection in Large Viral Datasets
AUTHORS: Lopez Fernandez, H; Duque, P; Vazquez, N; Fdez Riverola, F; Reboiro Jato, M; Vieira, CP ; Vieira, J ;
PUBLISHED: 2020, SOURCE: 13th International Conference on Practical Applications of Computational Biology and Bioinformatics (PACBB) in PRACTICAL APPLICATIONS OF COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, VOLUME: 1005
INDEXED IN: Scopus WOS
18
TITLE: Multiple loci linked to inversions are associated with eye size variation in species of the Drosophila virilis phylad  Full Text
AUTHORS: Reis, M; Wiegleb, G; Claude, J; Lata, R; Horchler, B; Ha, NT; Reimer, C; Vieira, CP ; Vieira, J ; Posnien, N;
PUBLISHED: 2020, SOURCE: SCIENTIFIC REPORTS, VOLUME: 10, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef: 8
IN MY: ORCID
19
TITLE: Mycobacterium tuberculosis associated with severe tuberculosis evades cytosolic surveillance systems and modulates IL-1 beta production
AUTHORS: Jeremy Sousa; Baltazar Ca; Ana Raquel Maceiras; Luisa Simoes Costa; Kaori L Fonseca; Ana Isabel Fernandes; Angelica Ramos; Teresa Carvalho; Leandro Barros; Carlos Magalhaes; Alvaro Chiner Oms; Henrique Machado; Maria Isabel Veiga; Albel Singh; Rui Pereira; Amorim, Antonio ; Jorge Vieira ; Cristina P Vieira ; Apoorva Bhatt; Fernando Rodrigues; Pedro N S Rodrigues ; Sebastien Gagneux; Antonio Gil Castro; Joao Tiago Guimaraes ; Helder Novais Bastos ; Nuno S Osorio; Inaki Comas; Margarida Saraiva; ...More
PUBLISHED: 2020, SOURCE: NATURE COMMUNICATIONS, VOLUME: 11, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef: 57
IN MY: ORCID
20
TITLE: A Bioinformatics Protocol for Quickly Creating Large-Scale Phylogenetic Trees
AUTHORS: Lopez Fernandez, H; Duque, P; Henriques, S; Vazquez, N; Fdez Riverola, F; Vieira, CP ; Reboiro Jato, M; Vieira, J ;
PUBLISHED: 2019, SOURCE: 12th International Conference on Practical Applications of Computational Biology and Bioinformatics (PACBB) in PRACTICAL APPLICATIONS OF COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, VOLUME: 803
INDEXED IN: Scopus WOS CrossRef: 2
IN MY: ORCID
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