Rui Manuel Vieira Reis
AuthID: R-000-FZ3
271
TITLE: Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context
AUTHORS: Hua-Sheng Chiu; Sonal Somvanshi; Ektaben Patel; Ting-Wen Chen; Vivek P Singh; Barry Zorman; Sagar L Patil; Yinghong Pan; Sujash S Chatterjee; Anil K Sood; Preethi H Gunaratne; Pavel Sumazin; Samantha J Caesar-Johnson; John A Demchok; Ina Felau; Melpomeni Kasapi; Martin L Ferguson; Carolyn M Hutter; Heidi J Sofia; Roy Tarnuzzer; ...More
PUBLISHED: 2018, SOURCE: Cell Reports, VOLUME: 23, ISSUE: 1
AUTHORS: Hua-Sheng Chiu; Sonal Somvanshi; Ektaben Patel; Ting-Wen Chen; Vivek P Singh; Barry Zorman; Sagar L Patil; Yinghong Pan; Sujash S Chatterjee; Anil K Sood; Preethi H Gunaratne; Pavel Sumazin; Samantha J Caesar-Johnson; John A Demchok; Ina Felau; Melpomeni Kasapi; Martin L Ferguson; Carolyn M Hutter; Heidi J Sofia; Roy Tarnuzzer; ...More
PUBLISHED: 2018, SOURCE: Cell Reports, VOLUME: 23, ISSUE: 1
272
TITLE: Somatic Mutational Landscape of Splicing Factor Genes and Their Functional Consequences across 33 Cancer Types
AUTHORS: Michael Seiler; Shouyong Peng; Anant A Agrawal; James Palacino; Teng Teng; Ping Zhu; Peter G Smith; Silvia Buonamici; Lihua Yu; Samantha J Caesar-Johnson; John A Demchok; Ina Felau; Melpomeni Kasapi; Martin L Ferguson; Carolyn M Hutter; Heidi J Sofia; Roy Tarnuzzer; Zhining Wang; Liming Yang; Jean C Zenklusen; ...More
PUBLISHED: 2018, SOURCE: Cell Reports, VOLUME: 23, ISSUE: 1
AUTHORS: Michael Seiler; Shouyong Peng; Anant A Agrawal; James Palacino; Teng Teng; Ping Zhu; Peter G Smith; Silvia Buonamici; Lihua Yu; Samantha J Caesar-Johnson; John A Demchok; Ina Felau; Melpomeni Kasapi; Martin L Ferguson; Carolyn M Hutter; Heidi J Sofia; Roy Tarnuzzer; Zhining Wang; Liming Yang; Jean C Zenklusen; ...More
PUBLISHED: 2018, SOURCE: Cell Reports, VOLUME: 23, ISSUE: 1
273
TITLE: Systematic Analysis of Splice-Site-Creating Mutations in Cancer
AUTHORS: Reyka G Jayasinghe; Song Cao; Qingsong Gao; Michael C Wendl; Nam Sy Vo; Sheila M Reynolds; Yanyan Zhao; Héctor Climente-González; Shengjie Chai; Fang Wang; Rajees Varghese; Mo Huang; Wen-Wei Liang; Matthew A Wyczalkowski; Sohini Sengupta; Zhi Li; Samuel H Payne; David Fenyö; Jeffrey H Miner; Matthew J Walter; ...More
PUBLISHED: 2018, SOURCE: Cell Reports, VOLUME: 23, ISSUE: 1
AUTHORS: Reyka G Jayasinghe; Song Cao; Qingsong Gao; Michael C Wendl; Nam Sy Vo; Sheila M Reynolds; Yanyan Zhao; Héctor Climente-González; Shengjie Chai; Fang Wang; Rajees Varghese; Mo Huang; Wen-Wei Liang; Matthew A Wyczalkowski; Sohini Sengupta; Zhi Li; Samuel H Payne; David Fenyö; Jeffrey H Miner; Matthew J Walter; ...More
PUBLISHED: 2018, SOURCE: Cell Reports, VOLUME: 23, ISSUE: 1
274
TITLE: Molecular Characterization and Clinical Relevance of Metabolic Expression Subtypes in Human Cancers
AUTHORS: Xinxin Peng; Zhongyuan Chen; Farshad Farshidfar; Xiaoyan Xu; Philip L Lorenzi; Yumeng Wang; Feixiong Cheng; Lin Tan; Kamalika Mojumdar; Di Du; Zhongqi Ge; Jun Li; George V Thomas; Kivanc Birsoy; Lingxiang Liu; Huiwen Zhang; Zhongming Zhao; Calena Marchand; John N Weinstein; Oliver F Bathe; ...More
PUBLISHED: 2018, SOURCE: Cell Reports, VOLUME: 23, ISSUE: 1
AUTHORS: Xinxin Peng; Zhongyuan Chen; Farshad Farshidfar; Xiaoyan Xu; Philip L Lorenzi; Yumeng Wang; Feixiong Cheng; Lin Tan; Kamalika Mojumdar; Di Du; Zhongqi Ge; Jun Li; George V Thomas; Kivanc Birsoy; Lingxiang Liu; Huiwen Zhang; Zhongming Zhao; Calena Marchand; John N Weinstein; Oliver F Bathe; ...More
PUBLISHED: 2018, SOURCE: Cell Reports, VOLUME: 23, ISSUE: 1
275
TITLE: Genomic and Molecular Landscape of DNA Damage Repair Deficiency across The Cancer Genome Atlas
AUTHORS: Theo A Knijnenburg; Linghua Wang; Michael T Zimmermann; Nyasha Chambwe; Galen F Gao; Andrew D Cherniack; Huihui Fan; Hui Shen; Gregory P Way; Casey S Greene; Yuexin Liu; Rehan Akbani; Bin Feng; Lawrence A Donehower; Chase Miller; Yang Shen; Mostafa Karimi; Haoran Chen; Pora Kim; Peilin Jia; ...More
PUBLISHED: 2018, SOURCE: Cell Reports, VOLUME: 23, ISSUE: 1
AUTHORS: Theo A Knijnenburg; Linghua Wang; Michael T Zimmermann; Nyasha Chambwe; Galen F Gao; Andrew D Cherniack; Huihui Fan; Hui Shen; Gregory P Way; Casey S Greene; Yuexin Liu; Rehan Akbani; Bin Feng; Lawrence A Donehower; Chase Miller; Yang Shen; Mostafa Karimi; Haoran Chen; Pora Kim; Peilin Jia; ...More
PUBLISHED: 2018, SOURCE: Cell Reports, VOLUME: 23, ISSUE: 1
276
TITLE: Driver Fusions and Their Implications in the Development and Treatment of Human Cancers
AUTHORS: Qingsong Gao; Wen-Wei Liang; Steven M Foltz; Gnanavel Mutharasu; Reyka G Jayasinghe; Song Cao; Wen-Wei Liao; Sheila M Reynolds; Matthew A Wyczalkowski; Lijun Yao; Lihua Yu; Sam Q Sun; Ken Chen; Alexander J Lazar; Ryan C Fields; Michael C Wendl; Brian A Van Tine; Ravi Vij; Feng Chen; Matti Nykter; ...More
PUBLISHED: 2018, SOURCE: Cell Reports, VOLUME: 23, ISSUE: 1
AUTHORS: Qingsong Gao; Wen-Wei Liang; Steven M Foltz; Gnanavel Mutharasu; Reyka G Jayasinghe; Song Cao; Wen-Wei Liao; Sheila M Reynolds; Matthew A Wyczalkowski; Lijun Yao; Lihua Yu; Sam Q Sun; Ken Chen; Alexander J Lazar; Ryan C Fields; Michael C Wendl; Brian A Van Tine; Ravi Vij; Feng Chen; Matti Nykter; ...More
PUBLISHED: 2018, SOURCE: Cell Reports, VOLUME: 23, ISSUE: 1
277
TITLE: Integrated Genomic Analysis of the Ubiquitin Pathway across Cancer Types
AUTHORS: Zhongqi Ge; Jake S Leighton; Yumeng Wang; Xinxin Peng; Zhongyuan Chen; Hu Chen; Yutong Sun; Fan Yao; Jun Li; Huiwen Zhang; Jianfang Liu; Craig D Shriver; Hai Hu; Helen Piwnica-Worms; Li Ma; Han Liang; Samantha J Caesar-Johnson; John A Demchok; Ina Felau; Melpomeni Kasapi; ...More
PUBLISHED: 2018, SOURCE: Cell Reports, VOLUME: 23, ISSUE: 1
AUTHORS: Zhongqi Ge; Jake S Leighton; Yumeng Wang; Xinxin Peng; Zhongyuan Chen; Hu Chen; Yutong Sun; Fan Yao; Jun Li; Huiwen Zhang; Jianfang Liu; Craig D Shriver; Hai Hu; Helen Piwnica-Worms; Li Ma; Han Liang; Samantha J Caesar-Johnson; John A Demchok; Ina Felau; Melpomeni Kasapi; ...More
PUBLISHED: 2018, SOURCE: Cell Reports, VOLUME: 23, ISSUE: 1
278
TITLE: Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas
AUTHORS: Joshua D Campbell; Christina Yau; Reanne Bowlby; Yuexin Liu; Kevin Brennan; Huihui Fan; Alison M Taylor; Chen Wang; Vonn Walter; Rehan Akbani; Lauren Averett Byers; Chad J Creighton; Cristian Coarfa; Juliann Shih; Andrew D Cherniack; Olivier Gevaert; Marcos Prunello; Hui Shen; Pavana Anur; Jianhong Chen; ...More
PUBLISHED: 2018, SOURCE: Cell Reports, VOLUME: 23, ISSUE: 1
AUTHORS: Joshua D Campbell; Christina Yau; Reanne Bowlby; Yuexin Liu; Kevin Brennan; Huihui Fan; Alison M Taylor; Chen Wang; Vonn Walter; Rehan Akbani; Lauren Averett Byers; Chad J Creighton; Cristian Coarfa; Juliann Shih; Andrew D Cherniack; Olivier Gevaert; Marcos Prunello; Hui Shen; Pavana Anur; Jianhong Chen; ...More
PUBLISHED: 2018, SOURCE: Cell Reports, VOLUME: 23, ISSUE: 1
279
TITLE: Spatial Organization and Molecular Correlation of Tumor-Infiltrating Lymphocytes Using Deep Learning on Pathology Images
AUTHORS: Joel Saltz; Rajarsi Gupta; Le Hou; Tahsin Kurc; Pankaj Singh; Vu Nguyen; Dimitris Samaras; Kenneth R Shroyer; Tianhao Zhao; Rebecca Batiste; John Van Arnam; Ilya Shmulevich; Arvind U.K Rao; Alexander J Lazar; Ashish Sharma; Vésteinn Thorsson; Samantha J Caesar-Johnson; John A Demchok; Ina Felau; Melpomeni Kasapi; ...More
PUBLISHED: 2018, SOURCE: Cell Reports, VOLUME: 23, ISSUE: 1
AUTHORS: Joel Saltz; Rajarsi Gupta; Le Hou; Tahsin Kurc; Pankaj Singh; Vu Nguyen; Dimitris Samaras; Kenneth R Shroyer; Tianhao Zhao; Rebecca Batiste; John Van Arnam; Ilya Shmulevich; Arvind U.K Rao; Alexander J Lazar; Ashish Sharma; Vésteinn Thorsson; Samantha J Caesar-Johnson; John A Demchok; Ina Felau; Melpomeni Kasapi; ...More
PUBLISHED: 2018, SOURCE: Cell Reports, VOLUME: 23, ISSUE: 1
280
TITLE: Machine Learning Detects Pan-cancer Ras Pathway Activation in The Cancer Genome Atlas
AUTHORS: Gregory P Way; Francisco Sanchez-Vega; Konnor La; Joshua Armenia; Walid K Chatila; Augustin Luna; Chris Sander; Andrew D Cherniack; Marco Mina; Giovanni Ciriello; Nikolaus Schultz; Yolanda Sanchez; Casey S Greene; Samantha J Caesar-Johnson; John A Demchok; Ina Felau; Melpomeni Kasapi; Martin L Ferguson; Carolyn M Hutter; Heidi J Sofia; ...More
PUBLISHED: 2018, SOURCE: Cell Reports, VOLUME: 23, ISSUE: 1
AUTHORS: Gregory P Way; Francisco Sanchez-Vega; Konnor La; Joshua Armenia; Walid K Chatila; Augustin Luna; Chris Sander; Andrew D Cherniack; Marco Mina; Giovanni Ciriello; Nikolaus Schultz; Yolanda Sanchez; Casey S Greene; Samantha J Caesar-Johnson; John A Demchok; Ina Felau; Melpomeni Kasapi; Martin L Ferguson; Carolyn M Hutter; Heidi J Sofia; ...More
PUBLISHED: 2018, SOURCE: Cell Reports, VOLUME: 23, ISSUE: 1