João Miguel Marques Martins Damas
AuthID: R-000-QXC
1
TITLE: MD Simulations Reveal an Alternative Pathway for Dioxygen Diffusion in Aa3 Cytochrome C Oxidases
AUTHORS: Ana Sofia F Oliveira; Joao M Damas; Antonio M Baptista; Claudio M Soares;
PUBLISHED: 2014, SOURCE: 58th Annual Meeting of the Biophysical-Society in BIOPHYSICAL JOURNAL, VOLUME: 106, ISSUE: 2
AUTHORS: Ana Sofia F Oliveira; Joao M Damas; Antonio M Baptista; Claudio M Soares;
PUBLISHED: 2014, SOURCE: 58th Annual Meeting of the Biophysical-Society in BIOPHYSICAL JOURNAL, VOLUME: 106, ISSUE: 2
INDEXED IN: 
WOS
WOS2
TITLE: The Pathway for O-2 Diffusion inside CotA Laccase and Possible Implications on the Multicopper Oxidases Family Full Text
AUTHORS: Joao M Damas; Antonio M Baptista; Claudio M Soares;
PUBLISHED: 2014, SOURCE: JOURNAL OF CHEMICAL THEORY AND COMPUTATION, VOLUME: 10, ISSUE: 8
AUTHORS: Joao M Damas; Antonio M Baptista; Claudio M Soares;
PUBLISHED: 2014, SOURCE: JOURNAL OF CHEMICAL THEORY AND COMPUTATION, VOLUME: 10, ISSUE: 8
3
TITLE: Exploring O-2 Diffusion in A-Type Cytochrome c Oxidases: Molecular Dynamics Simulations Uncover Two Alternative Channels towards the Binuclear Site Full Text
AUTHORS: Sofia S F Oliveira; Joao M Damas; Antonio M Baptista; Claudio M Soares;
PUBLISHED: 2014, SOURCE: PLOS COMPUTATIONAL BIOLOGY, VOLUME: 10, ISSUE: 12
AUTHORS: Sofia S F Oliveira; Joao M Damas; Antonio M Baptista; Claudio M Soares;
PUBLISHED: 2014, SOURCE: PLOS COMPUTATIONAL BIOLOGY, VOLUME: 10, ISSUE: 12
4
TITLE: Putative dioxygen-binding sites and recognition of tigecycline and minocycline in the tetracycline-degrading monooxygenase TetX Full Text
AUTHORS: Gesa Volkers; Joao M Damas; Gottfried J Palm; Santosh Panjikar; Claudio M Soares ; Winfried Hinrichs;
PUBLISHED: 2013, SOURCE: ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, VOLUME: 69, ISSUE: 9
AUTHORS: Gesa Volkers; Joao M Damas; Gottfried J Palm; Santosh Panjikar; Claudio M Soares ; Winfried Hinrichs;
PUBLISHED: 2013, SOURCE: ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, VOLUME: 69, ISSUE: 9
5
TITLE: Predicting the Thermodynamics and Kinetics of Helix Formation in a Cyclic Peptide Model Full Text
AUTHORS: Joao M Damas; Luis C S Filipe; Sara R R Campos; Diana Lousa ; Bruno L Victor; Antonio M Baptista; Claudio M Soares ;
PUBLISHED: 2013, SOURCE: JOURNAL OF CHEMICAL THEORY AND COMPUTATION, VOLUME: 9, ISSUE: 11
AUTHORS: Joao M Damas; Luis C S Filipe; Sara R R Campos; Diana Lousa ; Bruno L Victor; Antonio M Baptista; Claudio M Soares ;
PUBLISHED: 2013, SOURCE: JOURNAL OF CHEMICAL THEORY AND COMPUTATION, VOLUME: 9, ISSUE: 11
6
TITLE: Accurate Prediction of Kinetics and Thermodynamics of a Peptide Model using mu s-long MD Simulations Full Text
AUTHORS: Damas, JM; Filipe, LCS; Campos, SRR; Lousa, D; Victor, BL; Baptista, AM; Soares, CM;
PUBLISHED: 2013, SOURCE: 9th European-Biophysical-Societies-Association Congress in EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, VOLUME: 42
AUTHORS: Damas, JM; Filipe, LCS; Campos, SRR; Lousa, D; Victor, BL; Baptista, AM; Soares, CM;
PUBLISHED: 2013, SOURCE: 9th European-Biophysical-Societies-Association Congress in EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, VOLUME: 42
INDEXED IN: WOS
WOS7
TITLE: Exploring the dioxygen diffusion pathways in aa3 Cytochrome c oxidases: Insights from MD simulations Full Text
AUTHORS: Oliveira, ASF; Damas, JM; Baptista, AM; Soares, CM;
PUBLISHED: 2013, SOURCE: 9th European-Biophysical-Societies-Association Congress in EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, VOLUME: 42
AUTHORS: Oliveira, ASF; Damas, JM; Baptista, AM; Soares, CM;
PUBLISHED: 2013, SOURCE: 9th European-Biophysical-Societies-Association Congress in EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, VOLUME: 42
INDEXED IN: WOS
WOS8
TITLE: The role of Asp116 in the reductive cleavage of dioxygen to water in CotA laccase: assistance during the proton-transfer mechanism Full Text
AUTHORS: Catarina S Silva; Joao M Damas; Zhenjia J Chen; Vania Brissos ; Ligia O Martins ; Claudio M Soares ; Peter F Lindley; Isabel Bento ;
PUBLISHED: 2012, SOURCE: ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, VOLUME: 68, ISSUE: 2
AUTHORS: Catarina S Silva; Joao M Damas; Zhenjia J Chen; Vania Brissos ; Ligia O Martins ; Claudio M Soares ; Peter F Lindley; Isabel Bento ;
PUBLISHED: 2012, SOURCE: ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, VOLUME: 68, ISSUE: 2
9
TITLE: Structural consequences of ATP hydrolysis on the ABC transporter NBD dimer: Molecular dynamics studies of HlyB Full Text
AUTHORS: Joao M Damas; Sofia S F Oliveira; Antonio M Baptista ; Claudio M Soares ;
PUBLISHED: 2011, SOURCE: PROTEIN SCIENCE, VOLUME: 20, ISSUE: 7
AUTHORS: Joao M Damas; Sofia S F Oliveira; Antonio M Baptista ; Claudio M Soares ;
PUBLISHED: 2011, SOURCE: PROTEIN SCIENCE, VOLUME: 20, ISSUE: 7
10
TITLE: The multicopper oxidase from the archaeon Pyrobaculum aerophilum shows nitrous oxide reductase activity. A novel nitrous oxide reductase in Archaea Full Text
AUTHORS: Andre T Fernandes; Joao M Damas; Smilja Todorovic ; Robert Huber; Camilla C Baratto; Rebecca Pogni; Claudio M Soares ; Ligia O Martins ;
PUBLISHED: 2010, SOURCE: FEBS JOURNAL, VOLUME: 277, ISSUE: 15
AUTHORS: Andre T Fernandes; Joao M Damas; Smilja Todorovic ; Robert Huber; Camilla C Baratto; Rebecca Pogni; Claudio M Soares ; Ligia O Martins ;
PUBLISHED: 2010, SOURCE: FEBS JOURNAL, VOLUME: 277, ISSUE: 15
