1
TITLE: Development and application of efficient pathway enumeration algorithms for metabolic engineering applications  Full Text
AUTHORS: Liu, F; Vilaca, P; Rocha, I; Rocha, M ;
PUBLISHED: 2015, SOURCE: COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE, VOLUME: 118, ISSUE: 2
INDEXED IN: Scopus WOS CrossRef: 6
2
TITLE: An integrated network visualization framework towards metabolic engineering applications  Full Text
AUTHORS: Alberto Noronha; Paulo Vilaca; Miguel Rocha ;
PUBLISHED: 2014, SOURCE: BMC BIOINFORMATICS, VOLUME: 15, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef: 6
3
TITLE: Network Visualization Tools to Enhance Metabolic Engineering Platforms
AUTHORS: Noronha, A; Vilaca, P; Rocha, M ;
PUBLISHED: 2013, SOURCE: Advances in Intelligent Systems and Computing, VOLUME: 222
INDEXED IN: Scopus CrossRef: 1
4
TITLE: An integrated computational environment for elementary modes analysis of biochemical networks
AUTHORS: Paulo Maia; Paulo Vilaca; Isabel Rocha ; Marcellinus Pont; Jean Francois Tomb; Miguel Rocha ;
PUBLISHED: 2012, SOURCE: INTERNATIONAL JOURNAL OF DATA MINING AND BIOINFORMATICS, VOLUME: 6, ISSUE: 4
INDEXED IN: Scopus WOS CrossRef: 3
5
TITLE: An Algorithm to Assemble Gene-Protein-Reaction Associations for Genome-Scale Metabolic Model Reconstruction  Full Text
AUTHORS: Cardoso, J; Vilaca, P; Soares, S; Rocha, M ;
PUBLISHED: 2012, SOURCE: 7th International-Association-for-Pattern-Recognition (IAPR) International Conference on Pattern Recognition in Bioinformatics (PRIB) in PATTERN RECOGNITION IN BIOINFORMATICS, VOLUME: 7632
INDEXED IN: Scopus WOS CrossRef: 1
7
TITLE: A Study on the Robustness of Strain Optimization Algorithms
AUTHORS: Vilaca, P; Maia, P; Rocha, M ;
PUBLISHED: 2011, SOURCE: 5th International Conference on Practical Applications of Computational Biology and Bioinformatics in 5TH INTERNATIONAL CONFERENCE ON PRACTICAL APPLICATIONS OF COMPUTATIONAL BIOLOGY & BIOINFORMATICS (PACBB 2011), VOLUME: 93
INDEXED IN: Scopus WOS CrossRef
8
TITLE: OptFlux: an open-source software platform for in silico metabolic engineering  Full Text
AUTHORS: Isabel Rocha ; Paulo Maia; Pedro Evangelista; Paulo Vilaca; Simao Soares; Jose P Pinto ; Jens Nielsen; Kiran R Patil; Eugenio C Ferreira ; Miguel Rocha ;
PUBLISHED: 2010, SOURCE: BMC SYSTEMS BIOLOGY, VOLUME: 4, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef: 278