ProfileOfResearchers

Identified 9

TITLE: HAPHPIPE: Haplotype Reconstruction and Phylodynamics for Deep Sequencing of Intrahost Viral Populations
AUTHORS: Bendall, ML; Gibson, KM; Steiner, MC; Rentia, U; Perez Losada, M; Crandall, KA;
PUBLISHED: 2021, SOURCE: MOLECULAR BIOLOGY AND EVOLUTION, VOLUME: 38, ISSUE: 4

INDEXED IN:

Scopus

WOS

TITLE: Expression of Human Endogenous Retroviruses in Systemic Lupus Erythematosus: Multiomic Integration With Gene Expression Full Text
AUTHORS: Stearrett, N; Dawson, T; Rahnavard, A; Bachali, P; Bendall, ML; Zeng, C; Caricchio, R; Perez Losada, M; Grammer, AC; Lipsky, PE; Crandall, KA;
PUBLISHED: 2021, SOURCE: FRONTIERS IN IMMUNOLOGY, VOLUME: 12

INDEXED IN:

Scopus

WOS

TITLE: A cross-sectional study to characterize local HIV-1 dynamics in Washington, DC using next-generation sequencing Full Text
AUTHORS: Gibson, KM; Jair, K; Castel, AD; Bendall, ML; Wilbourn, B; Jordan, JA; Crandall, KA; Pérez Losada, M; Subramanian, T; Binkley, J; Taylor, R; Rayeed, N; Akridge, C; Purinton, S; Naughton, J; Rakhmanina, N; D’Angelo, L; Kharfen, M; Wood, A; Serlin, M; Kumar, P; Parenti, D; Greenberg, A; Monroe, A; Happ, LP; Jaurretche, M; Peterson, J; Wilcox, RD; Rana, S; Horberg, MA; Fernández, R; Hebou, A; Dieffenbach, C; Masur, H; Bordon, J; Teferi, G; Benator, D; Ruiz, ME; Goldstein, D; Hardy, D; ...More
PUBLISHED: 2020, SOURCE: SCIENTIFIC REPORTS, VOLUME: 10, ISSUE: 1

INDEXED IN:

Scopus

WOS

TITLE: Evaluation of haplotype callers for next-generation sequencing of viruses Full Text
AUTHORS: Anton Eliseev; Keylie M Gibson; Pavel Avdeyev; Dmitry Novik; Matthew L Bendall; Marcos Perez Losada; Nikita Alexeev; Keith A Crandall;
PUBLISHED: 2020, SOURCE: INFECTION GENETICS AND EVOLUTION, VOLUME: 82

INDEXED IN:

Scopus

WOS

TITLE: Validation of Variant Assembly Using HAPHPIPE with Next-Generation Sequence Data from Viruses Full Text
AUTHORS: Keylie M Gibson; Margaret C Steiner; Uzma Rentia; Matthew L Bendall; Marcos Perez Losada; Keith A Crandall;
PUBLISHED: 2020, SOURCE: VIRUSES-BASEL, VOLUME: 12, ISSUE: 7

INDEXED IN:

Scopus

WOS

TITLE: Human Endogenous Retrovirus Expression Is Associated with Head and Neck Cancer and Differential Survival Full Text
AUTHORS: Allison R Kolbe; Matthew L Bendall; Alexander T Pearson; Doru Paul; Douglas F Nixon; Marcos Perez Losada; Keith A Crandall;
PUBLISHED: 2020, SOURCE: VIRUSES-BASEL, VOLUME: 12, ISSUE: 9

INDEXED IN:

Scopus

WOS

TITLE: Telescope: Characterization of the retrotranscriptome by accurate estimation of transposable element expression Full Text
AUTHORS: Matthew L Bendall; Miguel de Mulder; Luis P Pedro Iniguez; Aaron Lecanda Sanchez; Marcos Perez Losada; Mario A Ostrowski; Brad B Jones; Lubbertus C F Mulder; Gustavo Reyes Teran; Keith A Crandall; Christopher E Ormsby; Douglas F Nixon;
PUBLISHED: 2019, SOURCE: PLOS COMPUTATIONAL BIOLOGY, VOLUME: 15, ISSUE: 9

INDEXED IN:

Scopus

WOS