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TITLE: Implementation and performance analysis of efficient index structures for DNA search algorithms in parallelplatforms  Full Text
AUTHORS: Nuno Sebastiao; Gustavo Encarnacao; Nuno Roma;
PUBLISHED: 2015, SOURCE: CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE, VOLUME: 27, ISSUE: 9
INDEXED IN: Scopus WOS
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TITLE: Optimized ASIP Architecture for Compressed BWT-Indexed Search in Bioinformatics Applications
AUTHORS: Nuno Sebastio; Paulo Flores; Nuno Roma ;
PUBLISHED: 2014, SOURCE: International Conference on High Performance Computing & Simulation (HPCS) in 2014 INTERNATIONAL CONFERENCE ON HIGH PERFORMANCE COMPUTING & SIMULATION (HPCS)
INDEXED IN: WOS
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TITLE: BioBlaze: Multi-Core SIMD ASIP for DNA Sequence Alignment  Full Text
AUTHORS: Nuno Neves ; Nuno Sebastiao; Andre Patricio; David Martins de Matos ; Pedro Tomas ; Paulo Flores ; Nuno Roma ;
PUBLISHED: 2013, SOURCE: IEEE 24th International Conference on Application-Specific Systems, Architectures and Processors (ASAP) in PROCEEDINGS OF THE 2013 IEEE 24TH INTERNATIONAL CONFERENCE ON APPLICATION-SPECIFIC SYSTEMS, ARCHITECTURES AND PROCESSORS (ASAP 13)
INDEXED IN: Scopus WOS DBLP CrossRef: 4
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TITLE: Integrated Hardware Architecture for Efficient Computation of the n-Best Bio-Sequence Local Alignments in Embedded Platforms  Full Text
AUTHORS: Nuno Sebastiao; Nuno Roma ; Paulo Flores ;
PUBLISHED: 2012, SOURCE: IEEE TRANSACTIONS ON VERY LARGE SCALE INTEGRATION (VLSI) SYSTEMS, VOLUME: 20, ISSUE: 7
INDEXED IN: Scopus WOS CrossRef
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TITLE: Hardware accelerator architecture for simultaneous short-read DNA sequences alignment with enhanced traceback phase  Full Text
AUTHORS: Nuno Sebastiao; Nuno Roma ; Paulo Flores ;
PUBLISHED: 2012, SOURCE: MICROPROCESSORS AND MICROSYSTEMS, VOLUME: 36, ISSUE: 2
INDEXED IN: Scopus WOS CrossRef
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TITLE: Application Specific Programmable IP Core for Motion Estimation: Technology Comparison Targeting Efficient Embedded Co-Processing Units
AUTHORS: Nuno Sebastiao; Tiago Diasu; Nuno Roma ; Paulo Flores ; Leonel Sousa ;
PUBLISHED: 2008, SOURCE: 11th Euromicro Conference on Digital System Design in 11TH EUROMICRO CONFERENCE ON DIGITAL SYSTEM DESIGN - ARCHITECTURES, METHODS AND TOOLS : DSD 2008, PROCEEDINGS
INDEXED IN: Scopus WOS DBLP CrossRef