Hugo López Fernández
AuthID: R-00H-4BF
1
TITLE: Auto-phylo v2 and auto-phylo-pipeliner: building advanced, flexible, and reusable pipelines for phylogenetic inferences, estimation of variability levels and identification of positively selected amino acid sites
AUTHORS: Lopez Fernandez, Hugo; Pinto, Miguel; Vieira, Cristina P. ; Duque, Pedro; Reboiro Jato, Miguel; Vieira, Jorge ;
PUBLISHED: 2024, SOURCE: JOURNAL OF INTEGRATIVE BIOINFORMATICS, VOLUME: 21, ISSUE: 2
AUTHORS: Lopez Fernandez, Hugo; Pinto, Miguel; Vieira, Cristina P. ; Duque, Pedro; Reboiro Jato, Miguel; Vieira, Jorge ;
PUBLISHED: 2024, SOURCE: JOURNAL OF INTEGRATIVE BIOINFORMATICS, VOLUME: 21, ISSUE: 2
INDEXED IN: 
Scopus 
WOS
Scopus WOS2
TITLE: On the Reproducibility of MiRNA-Seq Differential Expression Analyses in Neuropsychiatric Diseases
AUTHORS: Perez Rodriguez, Daniel; Lopez Fernandez, Hugo; Agis Balboa, Roberto C.;
PUBLISHED: 2022, SOURCE: 15th International Conference on Practical Applications of Computational Biology and Bioinformatics (PACBB) in PRACTICAL APPLICATIONS OF COMPUTATIONAL BIOLOGY & BIOINFORMATICS, PACBB 2021, VOLUME: 325
AUTHORS: Perez Rodriguez, Daniel; Lopez Fernandez, Hugo; Agis Balboa, Roberto C.;
PUBLISHED: 2022, SOURCE: 15th International Conference on Practical Applications of Computational Biology and Bioinformatics (PACBB) in PRACTICAL APPLICATIONS OF COMPUTATIONAL BIOLOGY & BIOINFORMATICS, PACBB 2021, VOLUME: 325
INDEXED IN: WOS
WOS3
TITLE: Application of miRNA-seq in neuropsychiatry: A methodological perspective Full Text
AUTHORS: Perez Rodriguez, D; Lopez Fernandez, H; Agis Balboa, RC;
PUBLISHED: 2021, SOURCE: COMPUTERS IN BIOLOGY AND MEDICINE, VOLUME: 135
AUTHORS: Perez Rodriguez, D; Lopez Fernandez, H; Agis Balboa, RC;
PUBLISHED: 2021, SOURCE: COMPUTERS IN BIOLOGY AND MEDICINE, VOLUME: 135
INDEXED IN: WOS
WOS4
TITLE: Inferring Positive Selection in Large Viral Datasets
AUTHORS: Lopez Fernandez, H; Duque, P; Vazquez, N; Fdez Riverola, F; Reboiro Jato, M; Vieira, CP ; Vieira, J ;
PUBLISHED: 2020, SOURCE: 13th International Conference on Practical Applications of Computational Biology and Bioinformatics (PACBB) in PRACTICAL APPLICATIONS OF COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, VOLUME: 1005
AUTHORS: Lopez Fernandez, H; Duque, P; Vazquez, N; Fdez Riverola, F; Reboiro Jato, M; Vieira, CP ; Vieira, J ;
PUBLISHED: 2020, SOURCE: 13th International Conference on Practical Applications of Computational Biology and Bioinformatics (PACBB) in PRACTICAL APPLICATIONS OF COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, VOLUME: 1005
INDEXED IN: Scopus WOS
Scopus WOS5
TITLE: An RNA-seq Based Machine Learning Approach Identifies Latent Tuberculosis Patients With an Active Tuberculosis Profile Full Text
AUTHORS: Olivia Estevez; Luis Anibarro; Elina Garet; Angeles Pallares; Laura Barcia; Laura Calvino; Cremildo Maueia; Tufaria Mussa; Florentino Fdez Riverola; Daniel Glez Pena; Miguel Reboiro Jato; Hugo Lopez Fernandez; Nuno A Fonseca; Rajko Reljic; Africa Gonzalez Fernandez;
PUBLISHED: 2020, SOURCE: FRONTIERS IN IMMUNOLOGY, VOLUME: 11
AUTHORS: Olivia Estevez; Luis Anibarro; Elina Garet; Angeles Pallares; Laura Barcia; Laura Calvino; Cremildo Maueia; Tufaria Mussa; Florentino Fdez Riverola; Daniel Glez Pena; Miguel Reboiro Jato; Hugo Lopez Fernandez; Nuno A Fonseca; Rajko Reljic; Africa Gonzalez Fernandez;
PUBLISHED: 2020, SOURCE: FRONTIERS IN IMMUNOLOGY, VOLUME: 11
INDEXED IN: WOS
WOS6
TITLE: EvoPPI: A Web Application to Compare Protein-Protein Interactions (PPIs) from Different Databases and Species
AUTHORS: Vazquez, N; Rocha, S; Lopez Fernandez, H; Torres, A; Camacho, R ; Fdez Riverola, F; Vieira, J ; Vieira, CP ; Reboiro Jato, M;
PUBLISHED: 2019, SOURCE: 12th International Conference on Practical Applications of Computational Biology and Bioinformatics (PACBB) in PRACTICAL APPLICATIONS OF COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, VOLUME: 803
AUTHORS: Vazquez, N; Rocha, S; Lopez Fernandez, H; Torres, A; Camacho, R ; Fdez Riverola, F; Vieira, J ; Vieira, CP ; Reboiro Jato, M;
PUBLISHED: 2019, SOURCE: 12th International Conference on Practical Applications of Computational Biology and Bioinformatics (PACBB) in PRACTICAL APPLICATIONS OF COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, VOLUME: 803
7
TITLE: Bioinformatics Protocols for Quickly Obtaining Large-Scale Data Sets for Phylogenetic Inferences Full Text
AUTHORS: Hugo Lopez Fernandez; Pedro Duque; Silvia Henriques; Noe Vazquez; Florentino Fdez Riverola; Cristina P Vieira; Miguel Reboiro Jato; Jorge Vieira;
PUBLISHED: 2019, SOURCE: INTERDISCIPLINARY SCIENCES-COMPUTATIONAL LIFE SCIENCES, VOLUME: 11, ISSUE: 1
AUTHORS: Hugo Lopez Fernandez; Pedro Duque; Silvia Henriques; Noe Vazquez; Florentino Fdez Riverola; Cristina P Vieira; Miguel Reboiro Jato; Jorge Vieira;
PUBLISHED: 2019, SOURCE: INTERDISCIPLINARY SCIENCES-COMPUTATIONAL LIFE SCIENCES, VOLUME: 11, ISSUE: 1
INDEXED IN: WOS
WOS8
TITLE: EvoPPI 1.0: a Web Platform for Within- and Between-Species Multiple Interactome Comparisons and Application to Nine PolyQ Proteins Determining Neurodegenerative Diseases Full Text
AUTHORS: Noe Vazquez; Sara Rocha; Hugo Lopez Fernandez; Andre Torres; Rui Camacho ; Florentino Fdez Riverola; Jorge Vieira ; Cristina P Vieira ; Miguel Reboiro Jato;
PUBLISHED: 2019, SOURCE: INTERDISCIPLINARY SCIENCES-COMPUTATIONAL LIFE SCIENCES, VOLUME: 11, ISSUE: 1
AUTHORS: Noe Vazquez; Sara Rocha; Hugo Lopez Fernandez; Andre Torres; Rui Camacho ; Florentino Fdez Riverola; Jorge Vieira ; Cristina P Vieira ; Miguel Reboiro Jato;
PUBLISHED: 2019, SOURCE: INTERDISCIPLINARY SCIENCES-COMPUTATIONAL LIFE SCIENCES, VOLUME: 11, ISSUE: 1
9
TITLE: BDBM 1.0: A Desktop Application for Efficient Retrieval and Processing of High-Quality Sequence Data and Application to the Identification of the Putative Coffea S-Locus Full Text
AUTHORS: Noe Vazquez; Hugo Lopez Fernandez; Cristina P Vieira ; Florentino Fdez Riverola; Jorge Vieira ; Miguel Reboiro Jato;
PUBLISHED: 2019, SOURCE: INTERDISCIPLINARY SCIENCES-COMPUTATIONAL LIFE SCIENCES, VOLUME: 11, ISSUE: 1
AUTHORS: Noe Vazquez; Hugo Lopez Fernandez; Cristina P Vieira ; Florentino Fdez Riverola; Jorge Vieira ; Miguel Reboiro Jato;
PUBLISHED: 2019, SOURCE: INTERDISCIPLINARY SCIENCES-COMPUTATIONAL LIFE SCIENCES, VOLUME: 11, ISSUE: 1
INDEXED IN: WOS
WOS10
TITLE: DEWE: A novel tool for executing differential expression RNA-Seq workflows in biomedical research Full Text
AUTHORS: Hugo Lopez Fernandez; Aitor Blanco Miguez; Florentino Fdez Riverola; Borja Sanchez; Analia Lourenco;
PUBLISHED: 2019, SOURCE: COMPUTERS IN BIOLOGY AND MEDICINE, VOLUME: 107
AUTHORS: Hugo Lopez Fernandez; Aitor Blanco Miguez; Florentino Fdez Riverola; Borja Sanchez; Analia Lourenco;
PUBLISHED: 2019, SOURCE: COMPUTERS IN BIOLOGY AND MEDICINE, VOLUME: 107
INDEXED IN: WOS
WOS