Emanuel José Vieira Gonçalves


AuthID: R-00J-VCM

Confirmed Publications: 33



21
TITLE: A Landscape of Pharmacogenomic Interactions in Cancer
AUTHORS: Iorio, F; Knijnenburg, TA; Vis, DJ; Bignell, GR; Menden, MP; Schubert, M; Aben, N; Gonçalves, Emanuel ; Barthorpe, S; Lightfoot, H; Cokelaer, T; Greninger, P; van Dyk, E; Chang, H; de Silva, H; Heyn, H; Deng, XM; Egan, RK; Liu, QS; Mironenko, T; Mitropoulos, X; Richardson, L; Wang, JH; Zhang, TH; Moran, S; Sayols, S; Soleimani, M; Tamborero, D; Lopez Bigas, N; Ross Macdonald, P; Esteller, M; Gray, NS; Haber, DA; Stratton, MR; Benes, CH; Wessels, LFA; Saez Rodriguez, J; McDermott, U; Garnett, MJ; ...More
PUBLISHED: 2016, SOURCE: CELL, VOLUME: 166, ISSUE: 3
INDEXED IN: Scopus WOS CrossRef: 716
IN MY: ORCID
22
TITLE: Annexin A1 sustains tumor metabolism and cellular proliferation upon stable loss of HIF1A
AUTHORS: Rohwer, N; Bindel, F; Grimm, C; Lin, SLJ; Wappler, J; Klinger, B; Bluthgen, N; Du Bois, I; Schmeck, B; Lehrach, H; de Graauw, M; Gonçalves, Emanuel ; Saez Rodriguez, J; Tan, P; Grabsch, HI; Prigione, A; Kempa, S; Cramer, T;
PUBLISHED: 2016, SOURCE: ONCOTARGET, VOLUME: 7, ISSUE: 6
INDEXED IN: Scopus WOS CrossRef: 8
IN MY: ORCID
23
TITLE: Fumarate is an epigenetic modifier that elicits epithelial-to-mesenchymal transition  Full Text
AUTHORS: Sciacovelli, M; Gonçalves, Emanuel ; Johnson, TI; Zecchini, VR; da Costa, ASH; Gaude, E; Drubbel, AV; Theobald, SJ; Abbo, SR; Tran, MGB; Rajeeve, V; Cardaci, S; Foster, S; Yun, HY; Cutillas, P; Warren, A; Gnanapragasam, V; Gottlieb, E; Franze, K; Huntly, B; Maher, ER; Maxwell, PH; Saez Rodriguez, J; Frezza, C; ...More
PUBLISHED: 2016, SOURCE: NATURE, VOLUME: 537, ISSUE: 7621
INDEXED IN: Scopus WOS CrossRef: 248
IN MY: ORCID
24
TITLE: A model integration approach linking signalling and gene-regulatory logic with kinetic metabolic models  Full Text
AUTHORS: Ryll, A; Bucher, J; Bonin, A; Bongard, S; Gonçalves, Emanuel ; Saez Rodriguez, J; Niklas, J; Klamt, S;
PUBLISHED: 2014, SOURCE: BIOSYSTEMS, VOLUME: 124, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef: 10
IN MY: ORCID
25
TITLE: Bridging the layers: towards integration of signal transduction, regulation and metabolism into mathematical models  Full Text
AUTHORS: Gonçalves, Emanuel ; Bucher, J; Ryll, A; Niklas, J; Mauch, K; Klamt, S; Rocha, M ; Saez Rodriguez, J;
PUBLISHED: 2013, SOURCE: MOLECULAR BIOSYSTEMS, VOLUME: 9, ISSUE: 7
INDEXED IN: Scopus WOS CrossRef: 72
IN MY: ORCID
26
TITLE: Cyrface: An interface from Cytoscape to R that provides a user interface to R packages
AUTHORS: Gonçalves, Emanuel ; Gonçalves, E;
PUBLISHED: 2013, SOURCE: F1000Research, VOLUME: 2
INDEXED IN: Scopus CrossRef: 3
IN MY: ORCID
27
TITLE: CySBGN: A Cytoscape plug-in to integrate SBGN maps  Full Text
AUTHORS: Gonçalves, Emanuel ; van Iersel, M; Saez Rodriguez, J;
PUBLISHED: 2013, SOURCE: BMC BIOINFORMATICS, VOLUME: 14, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef: 16
IN MY: ORCID
28
TITLE: DvD: An R/Cytoscape pipeline for drug repurposing using public repositories of gene expression data  Full Text
AUTHORS: Pacini, C; Iorio, F; Gonçalves, Emanuel ; Iskar, M; Klabunde, T; Bork, P; Saez Rodriguez, J;
PUBLISHED: 2013, SOURCE: BIOINFORMATICS, VOLUME: 29, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef: 49
IN MY: ORCID
29
TITLE: SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools  Full Text
AUTHORS: Claudine Chaouiya ; Duncan Berenguier; Sarah M Keating; Aurelien Naldi; Martijn P van Iersel; Nicolas Rodriguez; Andreas Draeger; Finja Buechel; Thomas Cokelaer; Bryan Kowal; Benjamin Wicks; Gonçalves, Emanuel ; Julien Dorier; Michel Page; Pedro T Monteiro ; Axel von Kamp; Ioannis Xenarios; Hidde de Jong; Michael Hucka; Steffen Klamt; Denis Thieffry; Nicolas Le Novere; Julio Saez Rodriguez; Tomas Helikar; ...More
PUBLISHED: 2013, SOURCE: BMC SYSTEMS BIOLOGY, VOLUME: 7, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef: 83
IN MY: ORCID
30
TITLE: CellNOptR: a flexible toolkit to train protein signaling networks to data using multiple logic formalisms  Full Text
AUTHORS: Terfve, C; Cokelaer, T; Henriques, D; MacNamara, A; Gonçalves, Emanuel ; Morris, MK; van Iersel, M; Lauffenburger, DA; Saez Rodriguez, J;
PUBLISHED: 2012, SOURCE: BMC SYSTEMS BIOLOGY, VOLUME: 6, ISSUE: 1
INDEXED IN: Scopus WOS CrossRef: 126
IN MY: ORCID
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