Julio Saez-Rodriguez
AuthID: R-00G-D8F
1
TITLE: Pan-Cancer landscape of protein activities identifies drivers of signalling dysregulation and patient survival Full Text
AUTHORS: Sousa, Abel; Dugourd, Aurelien; Memon, Danish; Petursson, Borgthor; Petsalaki, Evangelia; Saez Rodriguez, Julio; Beltrao, Pedro;
PUBLISHED: 2023, SOURCE: MOLECULAR SYSTEMS BIOLOGY, VOLUME: 19, ISSUE: 3
AUTHORS: Sousa, Abel; Dugourd, Aurelien; Memon, Danish; Petursson, Borgthor; Petsalaki, Evangelia; Saez Rodriguez, Julio; Beltrao, Pedro;
PUBLISHED: 2023, SOURCE: MOLECULAR SYSTEMS BIOLOGY, VOLUME: 19, ISSUE: 3
INDEXED IN: 
Scopus 
WOS
Scopus WOS2
TITLE: SysMod: the ISCB community for data-driven computational modelling and multi-scale analysis of biological systems Full Text
AUTHORS: Drager, A; Helikar, T; Barberis, M; Birtwistle, M; Calzone, L; Chaouiya, C; Hasenauer, J; Karr, JR; Niarakis, A; Martinez, MR; Saez Rodriguez, J; Thakar, J;
PUBLISHED: 2021, SOURCE: BIOINFORMATICS, VOLUME: 37, ISSUE: 21
AUTHORS: Drager, A; Helikar, T; Barberis, M; Birtwistle, M; Calzone, L; Chaouiya, C; Hasenauer, J; Karr, JR; Niarakis, A; Martinez, MR; Saez Rodriguez, J; Thakar, J;
PUBLISHED: 2021, SOURCE: BIOINFORMATICS, VOLUME: 37, ISSUE: 21
INDEXED IN: WOS
WOS3
TITLE: Post-translational regulation of metabolism in fumarate hydratase deficient cancer cells Full Text
AUTHORS: Gonçalves, Emanuel ; Sciacovelli, M; Costa, ASH; Tran, MGB; Johnson, TI; Machado, D; Frezza, C; Saez Rodriguez, J;
PUBLISHED: 2018, SOURCE: METABOLIC ENGINEERING, VOLUME: 45
AUTHORS: Gonçalves, Emanuel ; Sciacovelli, M; Costa, ASH; Tran, MGB; Johnson, TI; Machado, D; Frezza, C; Saez Rodriguez, J;
PUBLISHED: 2018, SOURCE: METABOLIC ENGINEERING, VOLUME: 45
4
TITLE: Genomic Determinants of Protein Abundance Variation in Colorectal Cancer Cells
AUTHORS: Roumeliotis, TI; Williams, SP; Gonçalves, Emanuel ; Alsinet, C; Velasco Herrera, MD; Aben, N; Ghavidel, FZ; Michaut, M; Schubert, M; Price, S; Wright, JC; Yu, L; Yang, M; Dienstmann, R; Guinney, J; Beltrao, P; Brazma, A; Pardo, M; Stegle, O; Adams, DJ; ...More
PUBLISHED: 2017, SOURCE: CELL REPORTS, VOLUME: 20, ISSUE: 9
AUTHORS: Roumeliotis, TI; Williams, SP; Gonçalves, Emanuel ; Alsinet, C; Velasco Herrera, MD; Aben, N; Ghavidel, FZ; Michaut, M; Schubert, M; Price, S; Wright, JC; Yu, L; Yang, M; Dienstmann, R; Guinney, J; Beltrao, P; Brazma, A; Pardo, M; Stegle, O; Adams, DJ; ...More
PUBLISHED: 2017, SOURCE: CELL REPORTS, VOLUME: 20, ISSUE: 9
5
TITLE: Widespread Post-transcriptional Attenuation of Genomic Copy-Number Variation in Cancer
AUTHORS: Gonçalves, Emanuel ; Fragoulis, A; Garcia Alonso, L; Cramer, T; Saez Rodriguez, J; Beltrao, P;
PUBLISHED: 2017, SOURCE: CELL SYSTEMS, VOLUME: 5, ISSUE: 4
AUTHORS: Gonçalves, Emanuel ; Fragoulis, A; Garcia Alonso, L; Cramer, T; Saez Rodriguez, J; Beltrao, P;
PUBLISHED: 2017, SOURCE: CELL SYSTEMS, VOLUME: 5, ISSUE: 4
6
TITLE: System-Wide Quantitative Proteomics of the Metabolic Syndrome in Mice: Genotypic and Dietary Effects Full Text
AUTHORS: Terfve, C; Sabido, E; Wu, YB; Gonçalves, Emanuel ; Choi, M; Vaga, S; Vitek, O; Saez Rodriguez, J; Aebersold, R;
PUBLISHED: 2017, SOURCE: JOURNAL OF PROTEOME RESEARCH, VOLUME: 16, ISSUE: 2
AUTHORS: Terfve, C; Sabido, E; Wu, YB; Gonçalves, Emanuel ; Choi, M; Vaga, S; Vitek, O; Saez Rodriguez, J; Aebersold, R;
PUBLISHED: 2017, SOURCE: JOURNAL OF PROTEOME RESEARCH, VOLUME: 16, ISSUE: 2
7
TITLE: Benchmarking substrate-based kinase activity inference using phosphoproteomic data Full Text
AUTHORS: Hernandez Armenta, C; Ochoa, D; Gonçalves, Emanuel ; Saez Rodriguez, J; Beltrao, P;
PUBLISHED: 2017, SOURCE: BIOINFORMATICS, VOLUME: 33, ISSUE: 12
AUTHORS: Hernandez Armenta, C; Ochoa, D; Gonçalves, Emanuel ; Saez Rodriguez, J; Beltrao, P;
PUBLISHED: 2017, SOURCE: BIOINFORMATICS, VOLUME: 33, ISSUE: 12
8
TITLE: Systematic Analysis of Transcriptional and Post-transcriptional Regulation of Metabolism in Yeast Full Text
AUTHORS: Gonçalves, Emanuel ; Nakic, ZR; Zampieri, M; Wagih, O; Ochoa, D; Sauer, U; Beltrao, P; Saez Rodriguez, J;
PUBLISHED: 2017, SOURCE: PLOS COMPUTATIONAL BIOLOGY, VOLUME: 13, ISSUE: 1
AUTHORS: Gonçalves, Emanuel ; Nakic, ZR; Zampieri, M; Wagih, O; Ochoa, D; Sauer, U; Beltrao, P; Saez Rodriguez, J;
PUBLISHED: 2017, SOURCE: PLOS COMPUTATIONAL BIOLOGY, VOLUME: 13, ISSUE: 1
9
TITLE: Logical Modeling and Dynamical Analysis of Cellular Networks Full Text
AUTHORS: Wassim Abou Jaoude; Pauline Traynard; PedroT. Monteiro; Julio Saez Rodriguez; Tomas Helikar; Denis Thieffry; Claudine Chaouiya;
PUBLISHED: 2016, SOURCE: FRONTIERS IN GENETICS, VOLUME: 7
AUTHORS: Wassim Abou Jaoude; Pauline Traynard; PedroT. Monteiro; Julio Saez Rodriguez; Tomas Helikar; Denis Thieffry; Claudine Chaouiya;
PUBLISHED: 2016, SOURCE: FRONTIERS IN GENETICS, VOLUME: 7
INDEXED IN: WOS
WOS10
TITLE: Reverse engineering of logic-based differential equation models using a mixed-integer dynamic optimization approach Full Text
AUTHORS: David Henriques; Miguel Rocha ; Julio Saez Rodriguez; Julio R Banga;
PUBLISHED: 2015, SOURCE: BIOINFORMATICS, VOLUME: 31, ISSUE: 18
AUTHORS: David Henriques; Miguel Rocha ; Julio Saez Rodriguez; Julio R Banga;
PUBLISHED: 2015, SOURCE: BIOINFORMATICS, VOLUME: 31, ISSUE: 18
